Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0339 ATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCGGCCACCGTCTCTGCCGGCGACGGAGCTCTCAAGCTACTCCTTCCCCACCCATTTCTGTATCGCTTCAAGGCCATAGAGGAAACTGTCTTTGTCGCTTCTCCATCTCCGCCACCGCCGCCGTTGCCCTCTGCTCCTCCACCGGAGGAGAAAACCATCTACTCTCCATTCCGGCCAAGCATGGCGGTGGTGGTCGGCGTTCTGACCACCACTTTCTCCATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTCGGATACTCGCGACACCCGAATTCGATGATGGGCGTTCCGAGCTTCACAACGAGGAAGAACTCCGGCATCGACCAAGCGGTAATCGAATCGCTGCCGATTTTCCGATTCGGGTCGTTGAGCGGGCAGAAGGAAGGCCTCGAATGCGCCGTTTGCCTCAACAAATTCGAGCCAACGGAGATTCTCAGACTCCTCCCGAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACCTGCCCTCTCTGCCGCTACAGAGTCGACCCCGAGGACGTCTTATTAGTCGAGGACGTCAATTTATTACTCCACAATCCCCTGCCGCCGCCGCCGCGGGATTCAAAGTCAAACGATGTAGTGTTGAACATAGAACAGGGGAGAAGAAGCGGCAAAGCCGGATCCGGTAGAGTCTCCGGCAGACACTCGTCGGTGGGCGAGAAGCGAACCGGCGAGTCCAGCCACCGGGATCCGGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGCGACGGTGGCCGTCGGGTGCTTCGATCGGCACCGGAAGGACGGGCTACTTCTGGCGGAGGAGAAAGCGAATCAGAATCAGAATCAGAATGAGAACAGATTGGAGCACCGGATCATAGTATCGCCGAGGACGGCGGCAGTGGTGCAGAAGCAGCAGAGATGGAGCGATGTAGAAGCGTCGGATCTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTCTCGGTAGCTTCATTACCACCGGAATTAAAGCGACAGCGACGGATGGGGATGATGGGGAAGCAGGCCGGAAAAGGGACCGGGATGATTATGGCAGATGTGTAA 1197 56.73 MGALPNPFSFFSLIFLFTVVSPATVSAGDGALKLLLPHPFLYRFKAIEETVFVASPSPPPPPLPSAPPPEEKTIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRHPNSMMGVPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNKFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNLLLHNPLPPPPRDSKSNDVVLNIEQGRRSGKAGSGRVSGRHSSVGEKRTGESSHRDPALLRRSLDSKRTATVAVGCFDRHRKDGLLLAEEKANQNQNQNENRLEHRIIVSPRTAAVVQKQQRWSDVEASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKQAGKGTGMIMADV 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2793457 2794653 - Maker00022541 Lcy2g0339 625104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0339 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Lcy2g0339 398 CDD RING-H2_EL5-like 161 204 - -
Lcy2g0339 398 SMART ring_2 162 203 IPR001841 -
Lcy2g0339 398 Pfam Ring finger domain 161 204 IPR001841 -
Lcy2g0339 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 366 - -
Lcy2g0339 398 SUPERFAMILY RING/U-box 142 209 - -
Lcy2g0339 398 MobiDBLite consensus disorder prediction 244 283 - -
Lcy2g0339 398 FunFam RING-H2 finger protein ATL43 137 211 - -
Lcy2g0339 398 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lcy2g0339 398 Coils Coil 305 325 - -
Lcy2g0339 398 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0339 Lcy-Chr2:2793457 Lcy2g0847 Lcy-Chr2:7651693 9.80E-44 dispersed
Lcy2g0339 Lcy-Chr2:2793457 Lcy11g1812 Lcy-Chr11:41901307 2.38E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0339 K19041 - csv:101203916 577.785