Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0344 ATGTTCTTCCAAATAATGGCGAGGATGCAAAGGTTGTTTTGTTTTGTTAGGATGTGGGATTTTGTGTATTCTTATTTGGGTCAAAAGCTGGTCTCTTTAAGTAAGTCGATGTGTGTTGGTTTGGTGTTTTTGTTTCGTTTTCTTGTTTGGGTGGATCCCTTTTGGATTGAACTCTTCTATTTTCTATTTATTTCATCATTTGGGTTCTGGGTTTTGGTTGTTTTGAAATCGAGAACTTACGGTTCTTTTCGGCCAGGGAATTTGGATCTCTTCTTCACCTCTATGTCTGCCTCTACGGTTTCTAGCATGTCCACTGTCGAAATGGAGGTTTTTTCTAATTCCCAACTCGTTGTTTTAACTGTTTTGATGTTCATAGGAGGTGAAGTTTTCACTTCCATGGTTGGTCTCCAATTAACGAAATTCAAACTCAAACTTTCTCGAGATAAAATTGTCTCTATTCCAAGCGATTTAAGTATTTCCTCAATAGAGTTGGGTGTCGTGAGAAAATTTGATCAGCCAGAAATGCTAAAATACAACTCCATCAAATTCTTGGGATTCGTGGTACTCGGTTATCTCTTAGTATTCCATCTCTTAGGCATAGCCATGGTTTTAGTTTACCTAAAAGTTGTTTCAAGTGCTAGAGAAGTCCTACAAGGAAAAGGGTTAAAAATGTCAACTTTTTCAATTTTTCTCGTAGTTTCTACTTTTGCAAGCTGTGGGTTTGTGCCAACAAATGAGAACATGATAGTATTTAGAAAGAACTTAGGTCTACTCGTCATACTCATTCCCCAAGCTCTTTTTGGAAACACCTTGTTTCCTTCTTGCTTGAGGTTTTTCATTTGGGGTTTGGGGAAATTTATGAACAAATCAGAAACTAACTACTTGTTGAGAAATAGTGAAGAAATTGGGTACTTGCATTTGCTTCCAAGACTCCATTCGTTGCTTTTGGTTGCGACGGTGTCTGGATTTGTTTTGATACAGATGGTAGCGATTGGCTCCATGGAGTGGAGCTCAGATGCATTGAGTGGACTGAATTATGTTGAGAAGTCGATTGGGATACTGTTTTTGAGCGTAAATTCAAGGCATACTGGTGAATCCATTGTTGATCTTTCGAGACTCTCTCCTGCCATCTTGTTTCTCTTTGTTGCCATGATGTTAGTCCTCTTCTCTCTCTCTTAA 1179 38.42 MFFQIMARMQRLFCFVRMWDFVYSYLGQKLVSLSKSMCVGLVFLFRFLVWVDPFWIELFYFLFISSFGFWVLVVLKSRTYGSFRPGNLDLFFTSMSASTVSSMSTVEMEVFSNSQLVVLTVLMFIGGEVFTSMVGLQLTKFKLKLSRDKIVSIPSDLSISSIELGVVRKFDQPEMLKYNSIKFLGFVVLGYLLVFHLLGIAMVLVYLKVVSSAREVLQGKGLKMSTFSIFLVVSTFASCGFVPTNENMIVFRKNLGLLVILIPQALFGNTLFPSCLRFFIWGLGKFMNKSETNYLLRNSEEIGYLHLLPRLHSLLLVATVSGFVLIQMVAIGSMEWSSDALSGLNYVEKSIGILFLSVNSRHTGESIVDLSRLSPAILFLFVAMMLVLFSLS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2819988 2821166 - Maker00022587 Lcy2g0344 625109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0344 392 Pfam Cation transport protein 177 387 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
Lcy2g0344 392 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 176 387 IPR051143 GO:0005886(PANTHER)|GO:0008324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0344 Lcy-Chr2:2819988 Lcy2g0346 Lcy-Chr2:2849865 6.58E-51 dispersed
Lcy2g0343 Lcy-Chr2:2812497 Lcy2g0344 Lcy-Chr2:2819988 1.49E-102 tandem
Lcy2g0344 Lcy-Chr2:2819988 Lcy2g0345 Lcy-Chr2:2836939 1.06E-48 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0344 K24976 - csv:101204406 421.779