Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0359 ATGGCAAGCCCATCTCCGCCTTTGTCGCCGGCCACCGCCATCAGCGTCATTCTGGTTTTGATCTCGATGGAGGTCGTCTTTGTGGCTTGGAGTGCTTCCACAGACGGCGAAGCGCTTCTCAAGTTCAAAGGGTCTCTGGAAATCAGCAACGATGCGTTGGGCAGTTGGGCTGCCGGGTCTTCCCCTTGCTCCGGCGACAAGGCGAATTGGGTCGGAGTTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAACTTGAGAACATGGGGCTCAAGGGCAACATTGACATTGAGTCTCTGGAGGGGGTGCCCCAATTAAGGGCCCTTAGCCTTATGAACAACGAATTTGAGGGCTCTTTGCCGGACGTCAAGAGACTTGGGGCTCTGAAAGCTCTGTATTTGTCACGAAACCGCTTCTCAGGGAACATTCCCGGGGACAAATTCTTGAGCATGTTGTCCTTGAAGAAGGTGCATTTGGCAAACAATCAGTTCGAGGGTCAGATTCCTTGGTCCTTGGTTGAGCTGCCTCGCCTCTTGGAGTTGAGGCTTGAAGGGAACAAGTTTTCTGGCCAAATTCCTAATTTTCAGCAGAACACTTTGAAGGCCTTTAATGTCTCTAATAACGATCAACTTCATGGCCAAATCCCACGTTCCCTCACCCAAATGGATCCATCCTCCTTTTCAGGCATTGAAGGTTTATGTGGACCGCCACTTGACAAACCATGCAACAGTACAAAGATGCCCTCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGTGCAGGAATAGTCATCCTTAGCCGTCGTAACCAATCATCTCCTTGCCAAGAGAGTCCAGCTCACAAATCTCCAAGTGCCAGTCAAGTTCCAGCAGTCGGGTCGAGGTCACCGGACTGCGGCTCGAGCCATGGGAGCTCGGGTAAACGGGCGCCCGAGAGTGCTAAATTGTCATTTGTAAGAGATGATTTAGAGAAGTTTGATTTATCAGACTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAAGCAGCCTTGTCCAACGGACCTGTGATGGTTGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACGCCAACTTGCTTCCTCTCGTGGCCTACTACTACAAAAGGGAAGAGAAGCTTCTCATTACGGACTTTGTTGAGAAGGGTAGCTTGGCCGTTCAACTTCATGGGCACAAAGCCGTGGGTCAACCAGCCCTGGATTGGCCAGCAAGGTTGAAGATCATCAAGGGCATTGCAAAGGGTCTTCGCTATCTCTACGCTGAACTTCCAAGTCTCATAACCCCACACGGCCATCTCAAGTCCTCAAATGTCCTTCTCAAGGCCAATTACGAGCCCATTCTTTCGGACTATGGCCTAATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCTAATGGTGGCCTACAAATCCCCCGAGTACTCTCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGAGTTTTGGGCTGTTGATCTTAGAGATTCTAACAGGGAAATTCCCAGCCAACTTTTTGCATCAGAACAAGAGTAGTGACGATGAGGATTTGGCGTGTTGGGTCAGATCTATTCCTGAAAAGGAATGGAACAGTCAAGTATTGGATAAGGACATGGGGCCAACCAAGAGCAGCGACGGAGAGATTATGAAGCTTCTGAGAATTGCAATGGCATGTTGCGAGAGCGACTTTGAGAAGAGGCTGGATTTGCGAGAGGCTGTGGAGAAGATTGAGGAGTTGAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATACGCCAGTGAAGCTGACATTAGATCTTCAAGAGGGTTATCTGATGAACTCAATTTCACCATGTGA 1947 48.48 MASPSPPLSPATAISVILVLISMEVVFVAWSASTDGEALLKFKGSLEISNDALGSWAAGSSPCSGDKANWVGVLCEKGNVWGLKLENMGLKGNIDIESLEGVPQLRALSLMNNEFEGSLPDVKRLGALKALYLSRNRFSGNIPGDKFLSMLSLKKVHLANNQFEGQIPWSLVELPRLLELRLEGNKFSGQIPNFQQNTLKAFNVSNNDQLHGQIPRSLTQMDPSSFSGIEGLCGPPLDKPCNSTKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSPCQESPAHKSPSASQVPAVGSRSPDCGSSHGSSGKRAPESAKLSFVRDDLEKFDLSDLLKASAEILGSGCFGSSYKAALSNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHANLLPLVAYYYKREEKLLITDFVEKGSLAVQLHGHKAVGQPALDWPARLKIIKGIAKGLRYLYAELPSLITPHGHLKSSNVLLKANYEPILSDYGLIPVVNQEHAQELMVAYKSPEYSQQGRITKKTDVWSFGLLILEILTGKFPANFLHQNKSSDDEDLACWVRSIPEKEWNSQVLDKDMGPTKSSDGEIMKLLRIAMACCESDFEKRLDLREAVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2949894 2956715 + Maker00022641 Lcy2g0359 625124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0359 648 Gene3D Ribonuclease Inhibitor 34 149 IPR032675 -
Lcy2g0359 648 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Lcy2g0359 648 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Lcy2g0359 648 FunFam pollen receptor-like kinase 1 309 415 - -
Lcy2g0359 648 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0359 648 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Lcy2g0359 648 FunFam Nuclear pore complex protein NUP107 32 193 - -
Lcy2g0359 648 ProSiteProfiles Protein kinase domain profile. 340 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0359 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 617 IPR046959 -
Lcy2g0359 648 Gene3D Ribonuclease Inhibitor 150 243 IPR032675 -
Lcy2g0359 648 SUPERFAMILY L domain-like 33 221 - -
Lcy2g0359 648 MobiDBLite consensus disorder prediction 280 320 - -
Lcy2g0359 648 MobiDBLite consensus disorder prediction 280 315 - -
Lcy2g0359 648 FunFam Pollen receptor-like kinase 1 416 626 - -
Lcy2g0359 648 Gene3D Phosphorylase Kinase; domain 1 307 415 - -
Lcy2g0359 648 SUPERFAMILY Protein kinase-like (PK-like) 344 614 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1363 Lcy-Chr13:31701227 Lcy2g0359 Lcy-Chr2:2949894 2.92E-147 dispersed
Lcy2g0359 Lcy-Chr2:2949894 Lcy9g1757 Lcy-Chr9:42775728 1.91E-156 dispersed
Lcy13g0027 Lcy-Chr13:390357 Lcy2g0359 Lcy-Chr2:2949894 8.06E-153 transposed
Lcy4g2271 Lcy-Chr4:49197189 Lcy2g0359 Lcy-Chr2:2949894 5.93E-118 transposed
Lcy6g0356 Lcy-Chr6:3295561 Lcy2g0359 Lcy-Chr2:2949894 9.49E-80 transposed
Lcy2g0359 Lcy-Chr2:2949894 Lcy5g2369 Lcy-Chr5:46513497 1.67E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65711 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0359 K28077 - csv:101213261 1051.2