Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0387 | ATGTGGACCTTGGGATATGATGATAATGGCGGAGAATTCTGCTTCTCTGAGCCCTTCCATGGCGGCCGCAAGCTTCGGCCTCTTGTTCCTCGCCCATTGCCTTCGCTTCGTGTCAATGGTGGCAACTTTCCTTCCCAATATTACCATCTGGCTAATTTTTTGCATGGTGAAAGCAAGAGAGAGTTATTGAACAATGAAAATATAATTTCATCTTCTCCACCGGCAATAGTAAGCTCATCAAGATGGAATCCGACGCCGGAGCAGCTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAGCACATCACCACCCAGCTCCGCCGCTTCGGCAAAATCGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGTCGTCAAACTGCCGCTGAAGAAGCCAAACATTCGGAATCTTCCCCCATGCAGGAATGTTCAAAAACTCAGAGAACAACAAAAGTAGTAGAATTTGAAGAAGAAGAAGAAGCAGAAGGAATAGAGTCAGTGGAAAGAGATAGGACATGGAACAATACTACAGTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCGACATATAAACGACATCGTCGAACCCTACAACGGTACCGATAAACGATGCAATGTCGTTGTTGACGACGACGACGACGACAATGGCAGTGAGGAATCTGAAGCGATGACGCTTCAGCTGTTTCCTCTCCGCAGCACGAAGTTCTGCAAATACGACAGCGAGAGGGAGGGACGACAAGATGATCGGCTAGAGATCATGTTGGATTCAGACATGATCAAGAGCTCCACCTTTTCTCCCAGTTGTTGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA | 903 | 47.18 | MWTLGYDDNGGEFCFSEPFHGGRKLRPLVPRPLPSLRVNGGNFPSQYYHLANFLHGESKRELLNNENIISSSPPAIVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITTQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEAKHSESSPMQECSKTQRTTKVVEFEEEEEAEGIESVERDRTWNNTTVNCQLINPTRKTRHINDIVEPYNGTDKRCNVVVDDDDDDNGSEESEAMTLQLFPLRSTKFCKYDSEREGRQDDRLEIMLDSDMIKSSTFSPSCCFQFFEFLPLKN | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3229147 | 3231955 | - | Maker00022390 | Lcy2g0387 | 625152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0387 | 300 | MobiDBLite | consensus disorder prediction | 138 | 184 | - | - | |
Lcy2g0387 | 300 | FunFam | WUSCHEL-related homeobox 4 | 79 | 146 | - | - | |
Lcy2g0387 | 300 | ProSiteProfiles | 'Homeobox' domain profile. | 75 | 140 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0387 | 300 | SUPERFAMILY | Homeodomain-like | 78 | 144 | IPR009057 | - | |
Lcy2g0387 | 300 | Gene3D | - | 79 | 146 | - | - | |
Lcy2g0387 | 300 | Pfam | Homeodomain | 80 | 139 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0387 | 300 | CDD | homeodomain | 81 | 141 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0387 | 300 | MobiDBLite | consensus disorder prediction | 141 | 156 | - | - | |
Lcy2g0387 | 300 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 73 | 267 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
Lcy2g0387 | 300 | SMART | HOX_1 | 77 | 144 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0635 | Lcy-Chr1:5476337 | Lcy2g0387 | Lcy-Chr2:3229147 | 4.41E-25 | dispersed | |
Lcy2g0387 | Lcy-Chr2:3229147 | Lcy8g1854 | Lcy-Chr8:44868386 | 1.09E-25 | dispersed | |
Lcy10g2207 | Lcy-Chr10:45984892 | Lcy2g0387 | Lcy-Chr2:3229147 | 9.98E-27 | transposed | |
Lcy11g0198 | Lcy-Chr11:2378819 | Lcy2g0387 | Lcy-Chr2:3229147 | 4.01E-29 | transposed | |
Lcy13g2095 | Lcy-Chr13:39934120 | Lcy2g0387 | Lcy-Chr2:3229147 | 7.21E-29 | transposed | |
Lcy2g0387 | Lcy-Chr2:3229147 | Lcy5g2383 | Lcy-Chr5:46630837 | 6.17E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19693 | None | None | None | None | Lcy | TF |
Pathway information
