Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0387 ATGTGGACCTTGGGATATGATGATAATGGCGGAGAATTCTGCTTCTCTGAGCCCTTCCATGGCGGCCGCAAGCTTCGGCCTCTTGTTCCTCGCCCATTGCCTTCGCTTCGTGTCAATGGTGGCAACTTTCCTTCCCAATATTACCATCTGGCTAATTTTTTGCATGGTGAAAGCAAGAGAGAGTTATTGAACAATGAAAATATAATTTCATCTTCTCCACCGGCAATAGTAAGCTCATCAAGATGGAATCCGACGCCGGAGCAGCTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAGCACATCACCACCCAGCTCCGCCGCTTCGGCAAAATCGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGTCGTCAAACTGCCGCTGAAGAAGCCAAACATTCGGAATCTTCCCCCATGCAGGAATGTTCAAAAACTCAGAGAACAACAAAAGTAGTAGAATTTGAAGAAGAAGAAGAAGCAGAAGGAATAGAGTCAGTGGAAAGAGATAGGACATGGAACAATACTACAGTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCGACATATAAACGACATCGTCGAACCCTACAACGGTACCGATAAACGATGCAATGTCGTTGTTGACGACGACGACGACGACAATGGCAGTGAGGAATCTGAAGCGATGACGCTTCAGCTGTTTCCTCTCCGCAGCACGAAGTTCTGCAAATACGACAGCGAGAGGGAGGGACGACAAGATGATCGGCTAGAGATCATGTTGGATTCAGACATGATCAAGAGCTCCACCTTTTCTCCCAGTTGTTGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 903 47.18 MWTLGYDDNGGEFCFSEPFHGGRKLRPLVPRPLPSLRVNGGNFPSQYYHLANFLHGESKRELLNNENIISSSPPAIVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITTQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEAKHSESSPMQECSKTQRTTKVVEFEEEEEAEGIESVERDRTWNNTTVNCQLINPTRKTRHINDIVEPYNGTDKRCNVVVDDDDDDNGSEESEAMTLQLFPLRSTKFCKYDSEREGRQDDRLEIMLDSDMIKSSTFSPSCCFQFFEFLPLKN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3229147 3231955 - Maker00022390 Lcy2g0387 625152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0387 300 MobiDBLite consensus disorder prediction 138 184 - -
Lcy2g0387 300 FunFam WUSCHEL-related homeobox 4 79 146 - -
Lcy2g0387 300 ProSiteProfiles 'Homeobox' domain profile. 75 140 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Lcy2g0387 300 Gene3D - 79 146 - -
Lcy2g0387 300 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 MobiDBLite consensus disorder prediction 141 156 - -
Lcy2g0387 300 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 73 267 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Lcy2g0387 300 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0635 Lcy-Chr1:5476337 Lcy2g0387 Lcy-Chr2:3229147 4.41E-25 dispersed
Lcy2g0387 Lcy-Chr2:3229147 Lcy8g1854 Lcy-Chr8:44868386 1.09E-25 dispersed
Lcy10g2207 Lcy-Chr10:45984892 Lcy2g0387 Lcy-Chr2:3229147 9.98E-27 transposed
Lcy11g0198 Lcy-Chr11:2378819 Lcy2g0387 Lcy-Chr2:3229147 4.01E-29 transposed
Lcy13g2095 Lcy-Chr13:39934120 Lcy2g0387 Lcy-Chr2:3229147 7.21E-29 transposed
Lcy2g0387 Lcy-Chr2:3229147 Lcy5g2383 Lcy-Chr5:46630837 6.17E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19693 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0387 - - - 0.0