Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0387 ATGTGGACCTTGGGATATGATGATAATGGCGGAGAATTCTGCTTCTCTGAGCCCTTCCATGGCGGCCGCAAGCTTCGGCCTCTTGTTCCTCGCCCATTGCCTTCGCTTCGTGTCAATGGTGGCAACTTTCCTTCCCAATATTACCATCTGGCTAATTTTTTGCATGGTGAAAGCAAGAGAGAGTTATTGAACAATGAAAATATAATTTCATCTTCTCCACCGGCAATAGTAAGCTCATCAAGATGGAATCCGACGCCGGAGCAGCTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACTCGAACGCCGTCCGCCGACCAAATCCAGCACATCACCACCCAGCTCCGCCGCTTCGGCAAAATCGAAGGCAAAAACGTCTTCTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGTCGTCAAACTGCCGCTGAAGAAGCCAAACATTCGGAATCTTCCCCCATGCAGGAATGTTCAAAAACTCAGAGAACAACAAAAGTAGTAGAATTTGAAGAAGAAGAAGAAGCAGAAGGAATAGAGTCAGTGGAAAGAGATAGGACATGGAACAATACTACAGTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCGACATATAAACGACATCGTCGAACCCTACAACGGTACCGATAAACGATGCAATGTCGTTGTTGACGACGACGACGACGACAATGGCAGTGAGGAATCTGAAGCGATGACGCTTCAGCTGTTTCCTCTCCGCAGCACGAAGTTCTGCAAATACGACAGCGAGAGGGAGGGACGACAAGATGATCGGCTAGAGATCATGTTGGATTCAGACATGATCAAGAGCTCCACCTTTTCTCCCAGTTGTTGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 903 47.18 MWTLGYDDNGGEFCFSEPFHGGRKLRPLVPRPLPSLRVNGGNFPSQYYHLANFLHGESKRELLNNENIISSSPPAIVSSSRWNPTPEQLRILEELYRRGTRTPSADQIQHITTQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAAEEAKHSESSPMQECSKTQRTTKVVEFEEEEEAEGIESVERDRTWNNTTVNCQLINPTRKTRHINDIVEPYNGTDKRCNVVVDDDDDDNGSEESEAMTLQLFPLRSTKFCKYDSEREGRQDDRLEIMLDSDMIKSSTFSPSCCFQFFEFLPLKN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3229147 3231955 - Maker00022390 Lcy2g0387 625152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0387 300 MobiDBLite consensus disorder prediction 138 184 - -
Lcy2g0387 300 FunFam WUSCHEL-related homeobox 4 79 146 - -
Lcy2g0387 300 ProSiteProfiles 'Homeobox' domain profile. 75 140 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Lcy2g0387 300 Gene3D - 79 146 - -
Lcy2g0387 300 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Lcy2g0387 300 MobiDBLite consensus disorder prediction 141 156 - -
Lcy2g0387 300 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 73 267 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Lcy2g0387 300 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0387 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0635 Lcy-Chr1:5476337 Lcy2g0387 Lcy-Chr2:3229147 4.41E-25 dispersed
Lcy2g0387 Lcy-Chr2:3229147 Lcy8g1854 Lcy-Chr8:44868386 1.09E-25 dispersed
Lcy10g2207 Lcy-Chr10:45984892 Lcy2g0387 Lcy-Chr2:3229147 9.98E-27 transposed
Lcy11g0198 Lcy-Chr11:2378819 Lcy2g0387 Lcy-Chr2:3229147 4.01E-29 transposed
Lcy13g2095 Lcy-Chr13:39934120 Lcy2g0387 Lcy-Chr2:3229147 7.21E-29 transposed
Lcy2g0387 Lcy-Chr2:3229147 Lcy5g2383 Lcy-Chr5:46630837 6.17E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014148 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19693 None None None None Lcy TF