Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0392 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCTAATTCTAATTTTGGTCGTAATTCGGATTCTGATTCTAATCTCAATTACCCTAATAATAATAAGCTCGATTATGTCGATAATGGTGGTGACAATGGTAGCCAATTGTTGAGTAGCGATTTACGCGCCCAATCGTCCATTCCCCCCAAACGCAAACCTCTTCGAAAACAAACCCATCTCCAAGGAGAAGGGATTCTTGAGCAATTGCCTGAGGAGGAGGACGACGTCGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACCTCAGAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCAATGGACTCCCACAAGAAGGGTGGATTGGAAACAGAATTTTTCACTGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATCATTGGTAAAGGAAGCTACGGGGTTGTTGGGTCTGCCATTGATACTCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTACGGTTGCTTCGTCATCCCGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCACCATCAGTTCTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCGAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCCGAACTTTGTGGCTCTTTTTTCTCGAAATTTGGGCTTTTGCCTTCGTTTATATCTAAAGTGCAATCTGTCTTGTGCCACATTGGCCTTTATGTGGCCTGCTGCTACAGCTTTTGGGGTTTAACTGATATAGCTAATTTGGTGCGTAAGCAAAGCCATAATAAGTTTACCCAGTGGGTATACATTTCTGACTTGATTCGATTGATCTGTATGTTATTTTTCCAGTACACTCCTGCAATTGATATTTGGAGCATTGGTTGCATATTTGCGGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTTCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCTGCTGAGTCCATTGCTAGGATTCGAAATGAAAAAGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCTGATCCCTTGGCTCTCCGCTTACTTCAGCGCCTGCTTGCATTTGATCCCAAAGATCGTCCTACAGCTGAAGAGGCATTAGCTGATCCTTACTTTCATGGTTTGGCCAATGTGGATCGGGAACCATCAACTCAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGTAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTGCACCCAAGGATGAGGTTGAACAGCACAATGATATAGAAGGAAGAAATGGTGCATATGTTGCTACATCTCTTCAGAGTCCTCCAAGGTCACAAGGGGATGGTTCGGAAAATGCAAATGGTAACGAACAAAATGGACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTCAAACCCAAAAACGACCTAGAGGAGGAACCGATTACGGAGACTAACGACGAGGCAATTGATGGGTTGTCGCATAAGGTTTCAGCCTTGTATACTTGA 2151 42.86 MGSGTLVDGVRRWFQRRTSSSSSSNSNFGRNSDSDSNLNYPNNNKLDYVDNGGDNGSQLLSSDLRAQSSIPPKRKPLRKQTHLQGEGILEQLPEEEDDVDDLDYSALKLIKVPKRTNHLRAPPPPPPPPPPPASMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKFGLLPSFISKVQSVLCHIGLYVACCYSFWGLTDIANLVRKQSHNKFTQWVYISDLIRLICMLFFQYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDEVEQHNDIEGRNGAYVATSLQSPPRSQGDGSENANGNEQNGPNKANYSARSLLKSASISASKCIGVKPKNDLEEEPITETNDEAIDGLSHKVSALYT 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3286615 3292997 + Maker00022000 Lcy2g0392 625157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0392 716 ProSitePatterns Protein kinases ATP-binding region signature. 163 187 IPR017441 GO:0005524(InterPro)
Lcy2g0392 716 MobiDBLite consensus disorder prediction 118 135 - -
Lcy2g0392 716 Gene3D Transferase(Phosphotransferase) domain 1 398 536 - -
Lcy2g0392 716 MobiDBLite consensus disorder prediction 113 140 - -
Lcy2g0392 716 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 154 336 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy2g0392 716 MobiDBLite consensus disorder prediction 611 627 - -
Lcy2g0392 716 FunFam Mitogen-activated protein kinase 243 339 - -
Lcy2g0392 716 SMART serkin_6 157 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0392 716 Gene3D Phosphorylase Kinase; domain 1 537 559 - -
Lcy2g0392 716 FunFam Mitogen-activated protein kinase 537 559 - -
Lcy2g0392 716 SUPERFAMILY Formin homology 2 domain (FH2 domain) 122 132 - -
Lcy2g0392 716 Gene3D Phosphorylase Kinase; domain 1 154 242 - -
Lcy2g0392 716 MobiDBLite consensus disorder prediction 592 665 - -
Lcy2g0392 716 ProSitePatterns MAP kinase signature. 192 295 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0392 716 FunFam Mitogen-activated protein kinase 146 251 - -
Lcy2g0392 716 MobiDBLite consensus disorder prediction 1 60 - -
Lcy2g0392 716 SUPERFAMILY Protein kinase-like (PK-like) 155 559 IPR011009 -
Lcy2g0392 716 Gene3D Transferase(Phosphotransferase) domain 1 243 333 - -
Lcy2g0392 716 MobiDBLite consensus disorder prediction 634 665 - -
Lcy2g0392 716 CDD STKc_TDY_MAPK 156 558 - -
Lcy2g0392 716 FunFam Mitogen-activated protein kinase 366 535 - -
Lcy2g0392 716 MobiDBLite consensus disorder prediction 14 60 - -
Lcy2g0392 716 Pfam Protein kinase domain 404 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0392 716 Pfam Protein kinase domain 157 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0392 716 ProSiteProfiles Protein kinase domain profile. 157 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0392 Lcy-Chr2:3286615 Lcy5g2387 Lcy-Chr5:46674684 1.42E-240 dispersed
Lcy2g0392 Lcy-Chr2:3286615 Lcy7g1245 Lcy-Chr7:15588274 2.16E-245 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65713 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0392 - - - 0.0