Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0392 | ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCTAATTCTAATTTTGGTCGTAATTCGGATTCTGATTCTAATCTCAATTACCCTAATAATAATAAGCTCGATTATGTCGATAATGGTGGTGACAATGGTAGCCAATTGTTGAGTAGCGATTTACGCGCCCAATCGTCCATTCCCCCCAAACGCAAACCTCTTCGAAAACAAACCCATCTCCAAGGAGAAGGGATTCTTGAGCAATTGCCTGAGGAGGAGGACGACGTCGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACCTCAGAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCAATGGACTCCCACAAGAAGGGTGGATTGGAAACAGAATTTTTCACTGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATCATTGGTAAAGGAAGCTACGGGGTTGTTGGGTCTGCCATTGATACTCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTACGGTTGCTTCGTCATCCCGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCACCATCAGTTCTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCGAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCCGAACTTTGTGGCTCTTTTTTCTCGAAATTTGGGCTTTTGCCTTCGTTTATATCTAAAGTGCAATCTGTCTTGTGCCACATTGGCCTTTATGTGGCCTGCTGCTACAGCTTTTGGGGTTTAACTGATATAGCTAATTTGGTGCGTAAGCAAAGCCATAATAAGTTTACCCAGTGGGTATACATTTCTGACTTGATTCGATTGATCTGTATGTTATTTTTCCAGTACACTCCTGCAATTGATATTTGGAGCATTGGTTGCATATTTGCGGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTTCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCTGCTGAGTCCATTGCTAGGATTCGAAATGAAAAAGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCTGATCCCTTGGCTCTCCGCTTACTTCAGCGCCTGCTTGCATTTGATCCCAAAGATCGTCCTACAGCTGAAGAGGCATTAGCTGATCCTTACTTTCATGGTTTGGCCAATGTGGATCGGGAACCATCAACTCAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGTAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTGCACCCAAGGATGAGGTTGAACAGCACAATGATATAGAAGGAAGAAATGGTGCATATGTTGCTACATCTCTTCAGAGTCCTCCAAGGTCACAAGGGGATGGTTCGGAAAATGCAAATGGTAACGAACAAAATGGACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTCAAACCCAAAAACGACCTAGAGGAGGAACCGATTACGGAGACTAACGACGAGGCAATTGATGGGTTGTCGCATAAGGTTTCAGCCTTGTATACTTGA | 2151 | 42.86 | MGSGTLVDGVRRWFQRRTSSSSSSNSNFGRNSDSDSNLNYPNNNKLDYVDNGGDNGSQLLSSDLRAQSSIPPKRKPLRKQTHLQGEGILEQLPEEEDDVDDLDYSALKLIKVPKRTNHLRAPPPPPPPPPPPASMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKFGLLPSFISKVQSVLCHIGLYVACCYSFWGLTDIANLVRKQSHNKFTQWVYISDLIRLICMLFFQYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDEVEQHNDIEGRNGAYVATSLQSPPRSQGDGSENANGNEQNGPNKANYSARSLLKSASISASKCIGVKPKNDLEEEPITETNDEAIDGLSHKVSALYT | 716 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3286615 | 3292997 | + | Maker00022000 | Lcy2g0392 | 625157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0392 | 716 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 187 | IPR017441 | GO:0005524(InterPro) | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 118 | 135 | - | - | |
Lcy2g0392 | 716 | Gene3D | Transferase(Phosphotransferase) domain 1 | 398 | 536 | - | - | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 113 | 140 | - | - | |
Lcy2g0392 | 716 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 154 | 336 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 611 | 627 | - | - | |
Lcy2g0392 | 716 | FunFam | Mitogen-activated protein kinase | 243 | 339 | - | - | |
Lcy2g0392 | 716 | SMART | serkin_6 | 157 | 513 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0392 | 716 | Gene3D | Phosphorylase Kinase; domain 1 | 537 | 559 | - | - | |
Lcy2g0392 | 716 | FunFam | Mitogen-activated protein kinase | 537 | 559 | - | - | |
Lcy2g0392 | 716 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 122 | 132 | - | - | |
Lcy2g0392 | 716 | Gene3D | Phosphorylase Kinase; domain 1 | 154 | 242 | - | - | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 592 | 665 | - | - | |
Lcy2g0392 | 716 | ProSitePatterns | MAP kinase signature. | 192 | 295 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0392 | 716 | FunFam | Mitogen-activated protein kinase | 146 | 251 | - | - | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Lcy2g0392 | 716 | SUPERFAMILY | Protein kinase-like (PK-like) | 155 | 559 | IPR011009 | - | |
Lcy2g0392 | 716 | Gene3D | Transferase(Phosphotransferase) domain 1 | 243 | 333 | - | - | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 634 | 665 | - | - | |
Lcy2g0392 | 716 | CDD | STKc_TDY_MAPK | 156 | 558 | - | - | |
Lcy2g0392 | 716 | FunFam | Mitogen-activated protein kinase | 366 | 535 | - | - | |
Lcy2g0392 | 716 | MobiDBLite | consensus disorder prediction | 14 | 60 | - | - | |
Lcy2g0392 | 716 | Pfam | Protein kinase domain | 404 | 513 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0392 | 716 | Pfam | Protein kinase domain | 157 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0392 | 716 | ProSiteProfiles | Protein kinase domain profile. | 157 | 513 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0392 | Lcy-Chr2:3286615 | Lcy5g2387 | Lcy-Chr5:46674684 | 1.42E-240 | dispersed | |
Lcy2g0392 | Lcy-Chr2:3286615 | Lcy7g1245 | Lcy-Chr7:15588274 | 2.16E-245 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65713 | None | None | None | None | Lcy | PK |
Pathway information
