Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0394 ATGGCTGGTGGTGATCAAGATATGGCAGTTCACTCTCTTGGATCTAAAGTTTCTTCTGTAGTTTCAGATCATGAACCTGAAAAATGTGCCAATAATGCCAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCTGTGCCGCCCATCTCGGTGGCCGCGGAGGCCGATCAAGCCCTCCGCCGTCCTCGGGGGCGGCCGGCCGGGTCCAAAAACAAGCCGAAACCACCCATTATCGTTACCCGAGATAGCGCCAATGCTCTCCGGGCTCATGCCATTGAGGTCAGCTCTGGCTGCGATGTCAATGAGAGCCTCTCCAATTTCGCCCGGAGGAAGCAGCGCGGAGTTTGCATTCTTAGTGGAAGTGGGTGCGTCACTAATGTCACACTCCGCCAGGCTGCTTCCTCTGGCGCCATTGTCACTCTCCATGGCCGCTTCGAGATTCTTTCATTGCTGGGATCGATCTTGCCACCACCAGCACCGTCAGGGATCACCGGTCTGACAATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGCGGAGTGGTGGTGGGTGCGCTCATTGCTTCTGGCCCCGTCGTGATCATGGCGGCAACATTCATGAATGCAACATTCGACCGCCTGCCATCGGACGATGACGAAGTGGCGGCTGCCATGCAGAGCCAACACTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATTTGTATGGAGTGCCACAGAACTTGATCACCAACAGCACTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCCGGCAGAACCATGTCAAAGACTTAA 822 55.72 MAGGDQDMAVHSLGSKVSSVVSDHEPEKCANNANHQQRPCFDPSLVSPKAVPPISVAAEADQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSLLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDDEVAAAMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSTLPPELYSWAAAGRTMSKT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3300818 3301773 + Maker00022365 Lcy2g0394 625159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0394 273 ProSiteProfiles PPC domain profile profile. 89 227 IPR005175 -
Lcy2g0394 273 Gene3D - 92 228 - -
Lcy2g0394 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 205 IPR005175 -
Lcy2g0394 273 MobiDBLite consensus disorder prediction 60 82 - -
Lcy2g0394 273 FunFam AT-hook motif nuclear-localized protein 92 234 - -
Lcy2g0394 273 CDD DUF296 93 175 IPR005175 -
Lcy2g0394 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 59 234 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy2g0394 273 MobiDBLite consensus disorder prediction 1 46 - -
Lcy2g0394 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0394 Lcy-Chr2:3300818 Lcy4g2010 Lcy-Chr4:46595440 4.94E-74 dispersed
Lcy2g0394 Lcy-Chr2:3300818 Lcy12g1745 Lcy-Chr12:38211174 5.02E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0394 - - - 0.0