Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0399 ATGGAAAATCAAACTGAAGTTCCTTGTGTACAAGAGACCGCCATAATTCTTGGAAATCCTGAAAGTTCCAATTGCAACCTTGATTCATCCATGTCTCGCCGCAGCCATGACGACGGCGGTGACGAGGAGCCTTCCGCCGGCGAGGAAGACGACGAAGCTGATGTGTCTGATGAGGACATGGAAGCCCTCCGGCGAGCGTGTAGGCTTGTTGGAGTCAATCCTGAGGAGTGTATTAATAATCTGTCGTCGTCAAATGCCGCCGGAGATGACTCTTTCGGCGGCAAAAAACCGGGCTCTGATTCTGATGATATTGATGATCTTGAACTTGTTCGGAATATTCGGAAACGGTTCTCGACTGCGGCCGATGAGCAGGACCAGGCTTTGTCTACGCAGCCGTTGAATACTCTCCCACCAGTGTCACCAGACGAGGAGGAAGACGAGTTCGAGACGCTCCGTCGGATTCGGCAACGCTTTGCGACGTATGAAAGTGAGCGATCAGTTTTGGGCCTAATGGCTAGAAAAGAAGTTGCTATGGGCAATGACGCTGATCACCCCACCCAAGTTGCGGAAACATCTATTCTCCCCCAAACCCTTGACACTAGACTACAAGCTGTGGAAGCTTCTATCAAAGAGATGAAGGTAAGCATCCCCCCAAACCTTAACACTAGGCTACAAGCCATGGAAACTTCTGTCGAAGAGATGAAGATTTTAAATGCTCCTTTCACTTTAGAGGAAGTGAGGAAGGCGGTTTTCGAGTTTGATAGGAGTAAGGCTCCTGGCCTTGGTGTGTTGCTTTGCAAAATCCTTGCCGCCTTCTTAAACCACCAACCAGACAACAACTCAAAACCTCTTTTGGAAGATGGCCAAATCAAAAAGATTCATGAGGAATATCCACACCTCATAGGAAGGATGGAGCTAGGAGGGCATATGGGATGTAGAGAGATGATCGAAGAGTTCAAGTTCTATATCCATCATTCCTTTCGTGAGAAGAGAAATGTTTTTATGGCAAATGGGGATACTTTGAGCAATAAACCCGATCAGTCTTGTGAATTTGATGGACCTCTGGAGATGGATTCTAACAACACAGTTGTTGAGAGACAGACATCCTCAGAAAGGTCATCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCTCAGCAGAAGTATATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATGTCGGCTGGAAAACCACAGGCTAAGGATTCAACAAAGAAGGACAAACGATTTTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGACCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGAAGCCTTACTGCAATTATTTTGGTATTTGGCAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTAGATAACATTCTTGCATCAATAAAAGACCTTGAGATTACCCCTGAAAAGGTTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAACTGGCTTCCATTTATCTTCGAAGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGATAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCGGCCCTTGGTCCTACTGACTTTCGACCTCTACCGGATACAAATTTATTATGTAATACTGATGATCCAAAACCTGCCCCAAAAAGAAATGTGAAGACAAGAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGCTGATGCCACTGCTCAGGTGGGTATTGCAAATATTTCGTCTTCTTTCCCGGAGGAGGTTGAATCTATAAAACCTCAAAGAAAACGAAGTAGAAATGGCCCGCATACCGCTAAGAGGAAGAAGGGAGTTCTGGAACTACATTCTAACAGTGAGAGATGTGTCGAACAGAATTTGGAAACTCAGAGCCTCGAGGTGCAGTTAAATAGTAAGGAATTAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGGATGGTATGGAGTCGTGTGAGAAAAAAGTTGCTGAGACGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCAATGACATGGACGAGTATAATCCCTCCATCCTTCCAGCAGATACAGCATTGCTGGCCAGCACTACTGGGGATGATATTATAGAAAGAAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCGTTACCACACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGATAAAGGCCATGGGGTTCGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTTATTGGTTTCTTGTCAACAAGTGGAGCTGGAGAGGTCGGGGATGAAGGAGCTTCATTGTCATAATCAATCAAAGAAGAGAAACCATAACAGTACAAATACGACGAGTTCATTAGGAACGTCGGAGGCAGTTGAAGAAGTCGATGACTGCACTCTTTTGGGATTTTTGCAAAAAAGAGTGAAGAGGACGAACACCACACATGACAAGAAAGTTGATGGCAGCTCTAGTACTACTCCCTTAGAAGTTGATAATGAGGATAATGATCCTACCATTGCCTCGCTTCTCAAGGATAAATTGAAGAGAAAAAGGCATCAAGCGCCCAGTGGTGGTGGCTAA 3720 43.55 MENQTEVPCVQETAIILGNPESSNCNLDSSMSRRSHDDGGDEEPSAGEEDDEADVSDEDMEALRRACRLVGVNPEECINNLSSSNAAGDDSFGGKKPGSDSDDIDDLELVRNIRKRFSTAADEQDQALSTQPLNTLPPVSPDEEEDEFETLRRIRQRFATYESERSVLGLMARKEVAMGNDADHPTQVAETSILPQTLDTRLQAVEASIKEMKVSIPPNLNTRLQAMETSVEEMKILNAPFTLEEVRKAVFEFDRSKAPGLGVLLCKILAAFLNHQPDNNSKPLLEDGQIKKIHEEYPHLIGRMELGGHMGCREMIEEFKFYIHHSFREKRNVFMANGDTLSNKPDQSCEFDGPLEMDSNNTVVERQTSSERSSMLAFEKGSLPKAALAFIDAIKKNRSQQKYIRSKMIHLEARIEENKKLRKRFKILKDFQGSCRRKTSCALSQMIDPRVQLMSAGKPQAKDSTKKDKRFSAMYYGPAENSHVACYKMALTKFPPSVDRKKWTNVERENLGKGIRQQFQEMVLQISVDQIRSLTAIILVFGSGLQGFSADSDDLDNILASIKDLEITPEKVREFLPKVNWDKLASIYLRSRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPLPDTNLLCNTDDPKPAPKRNVKTRRIPVSRNEKSATGDAPKKRRSNNQRNQADATAQVGIANISSSFPEEVESIKPQRKRSRNGPHTAKRKKGVLELHSNSERCVEQNLETQSLEVQLNSKELERTSSDCTETVDEDGMESCEKKVAETLSKRDVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSILPADTALLASTTGDDIIERNGESVADKDLDDSNSFSLPHSCLELRATDSEGVNSYSVDEVTDKGHGVRKYQGRRKKNSKTSNKSQDLLVSCQQVELERSGMKELHCHNQSKKRNHNSTNTTSSLGTSEAVEEVDDCTLLGFLQKRVKRTNTTHDKKVDGSSSTTPLEVDNEDNDPTIASLLKDKLKRKRHQAPSGGG 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3340478 3353781 + Maker00022787 Lcy2g0399 625164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1148 1171 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1155 1170 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 122 137 - -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 664 708 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 769 813 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 717 763 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 611 656 IPR001005 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 868 901 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 78 107 - -
Lcy2g0399 1239 Gene3D - 663 713 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 842 952 - -
Lcy2g0399 1239 CDD SANT 772 814 IPR001005 -
Lcy2g0399 1239 CDD SANT 666 710 IPR001005 -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 764 818 IPR017930 -
Lcy2g0399 1239 SMART sant 663 712 IPR001005 -
Lcy2g0399 1239 SMART sant 768 816 IPR001005 -
Lcy2g0399 1239 SMART sant 499 607 IPR001005 -
Lcy2g0399 1239 SMART sant 610 660 IPR001005 -
Lcy2g0399 1239 SMART sant 716 765 IPR001005 -
Lcy2g0399 1239 Gene3D - 771 817 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1198 1212 - -
Lcy2g0399 1239 Gene3D - 714 768 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 588 655 IPR009057 -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 659 714 IPR017930 -
Lcy2g0399 1239 ProSiteProfiles SANT domain profile. 662 711 IPR017884 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 764 814 IPR001005 -
Lcy2g0399 1239 Gene3D - 608 658 - -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 716 763 IPR017930 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1098 1128 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 902 924 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 714 810 IPR009057 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 15 30 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 120 145 - -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 659 710 IPR001005 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 712 763 IPR001005 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1193 1218 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 42 57 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 15 60 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 643 714 IPR009057 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 606 658 IPR001005 -
Lcy2g0399 1239 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 45 1234 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lcy2g0399 1239 CDD SANT 720 761 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0399 K09422 - - csv:101216287 1369.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0316 Lcy-Chr11:5168112 Lcy2g0399 Lcy-Chr2:3340478 0 dispersed
Lcy2g0399 Lcy-Chr2:3340478 Lcy2g0669 Lcy-Chr2:5720870 1.05E-15 dispersed
Lcy2g0399 Lcy-Chr2:3340478 Lcy6g1483 Lcy-Chr6:23266120 1.31E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19694 None None None None Lcy TF