Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0399 ATGGAAAATCAAACTGAAGTTCCTTGTGTACAAGAGACCGCCATAATTCTTGGAAATCCTGAAAGTTCCAATTGCAACCTTGATTCATCCATGTCTCGCCGCAGCCATGACGACGGCGGTGACGAGGAGCCTTCCGCCGGCGAGGAAGACGACGAAGCTGATGTGTCTGATGAGGACATGGAAGCCCTCCGGCGAGCGTGTAGGCTTGTTGGAGTCAATCCTGAGGAGTGTATTAATAATCTGTCGTCGTCAAATGCCGCCGGAGATGACTCTTTCGGCGGCAAAAAACCGGGCTCTGATTCTGATGATATTGATGATCTTGAACTTGTTCGGAATATTCGGAAACGGTTCTCGACTGCGGCCGATGAGCAGGACCAGGCTTTGTCTACGCAGCCGTTGAATACTCTCCCACCAGTGTCACCAGACGAGGAGGAAGACGAGTTCGAGACGCTCCGTCGGATTCGGCAACGCTTTGCGACGTATGAAAGTGAGCGATCAGTTTTGGGCCTAATGGCTAGAAAAGAAGTTGCTATGGGCAATGACGCTGATCACCCCACCCAAGTTGCGGAAACATCTATTCTCCCCCAAACCCTTGACACTAGACTACAAGCTGTGGAAGCTTCTATCAAAGAGATGAAGGTAAGCATCCCCCCAAACCTTAACACTAGGCTACAAGCCATGGAAACTTCTGTCGAAGAGATGAAGATTTTAAATGCTCCTTTCACTTTAGAGGAAGTGAGGAAGGCGGTTTTCGAGTTTGATAGGAGTAAGGCTCCTGGCCTTGGTGTGTTGCTTTGCAAAATCCTTGCCGCCTTCTTAAACCACCAACCAGACAACAACTCAAAACCTCTTTTGGAAGATGGCCAAATCAAAAAGATTCATGAGGAATATCCACACCTCATAGGAAGGATGGAGCTAGGAGGGCATATGGGATGTAGAGAGATGATCGAAGAGTTCAAGTTCTATATCCATCATTCCTTTCGTGAGAAGAGAAATGTTTTTATGGCAAATGGGGATACTTTGAGCAATAAACCCGATCAGTCTTGTGAATTTGATGGACCTCTGGAGATGGATTCTAACAACACAGTTGTTGAGAGACAGACATCCTCAGAAAGGTCATCTATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCTCAGCAGAAGTATATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATGTCGGCTGGAAAACCACAGGCTAAGGATTCAACAAAGAAGGACAAACGATTTTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGACCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGAAGCCTTACTGCAATTATTTTGGTATTTGGCAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTAGATAACATTCTTGCATCAATAAAAGACCTTGAGATTACCCCTGAAAAGGTTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAACTGGCTTCCATTTATCTTCGAAGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGATAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCGGCCCTTGGTCCTACTGACTTTCGACCTCTACCGGATACAAATTTATTATGTAATACTGATGATCCAAAACCTGCCCCAAAAAGAAATGTGAAGACAAGAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGCTGATGCCACTGCTCAGGTGGGTATTGCAAATATTTCGTCTTCTTTCCCGGAGGAGGTTGAATCTATAAAACCTCAAAGAAAACGAAGTAGAAATGGCCCGCATACCGCTAAGAGGAAGAAGGGAGTTCTGGAACTACATTCTAACAGTGAGAGATGTGTCGAACAGAATTTGGAAACTCAGAGCCTCGAGGTGCAGTTAAATAGTAAGGAATTAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGGATGGTATGGAGTCGTGTGAGAAAAAAGTTGCTGAGACGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCAATGACATGGACGAGTATAATCCCTCCATCCTTCCAGCAGATACAGCATTGCTGGCCAGCACTACTGGGGATGATATTATAGAAAGAAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCGTTACCACACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGATAAAGGCCATGGGGTTCGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTTATTGGTTTCTTGTCAACAAGTGGAGCTGGAGAGGTCGGGGATGAAGGAGCTTCATTGTCATAATCAATCAAAGAAGAGAAACCATAACAGTACAAATACGACGAGTTCATTAGGAACGTCGGAGGCAGTTGAAGAAGTCGATGACTGCACTCTTTTGGGATTTTTGCAAAAAAGAGTGAAGAGGACGAACACCACACATGACAAGAAAGTTGATGGCAGCTCTAGTACTACTCCCTTAGAAGTTGATAATGAGGATAATGATCCTACCATTGCCTCGCTTCTCAAGGATAAATTGAAGAGAAAAAGGCATCAAGCGCCCAGTGGTGGTGGCTAA 3720 43.55 MENQTEVPCVQETAIILGNPESSNCNLDSSMSRRSHDDGGDEEPSAGEEDDEADVSDEDMEALRRACRLVGVNPEECINNLSSSNAAGDDSFGGKKPGSDSDDIDDLELVRNIRKRFSTAADEQDQALSTQPLNTLPPVSPDEEEDEFETLRRIRQRFATYESERSVLGLMARKEVAMGNDADHPTQVAETSILPQTLDTRLQAVEASIKEMKVSIPPNLNTRLQAMETSVEEMKILNAPFTLEEVRKAVFEFDRSKAPGLGVLLCKILAAFLNHQPDNNSKPLLEDGQIKKIHEEYPHLIGRMELGGHMGCREMIEEFKFYIHHSFREKRNVFMANGDTLSNKPDQSCEFDGPLEMDSNNTVVERQTSSERSSMLAFEKGSLPKAALAFIDAIKKNRSQQKYIRSKMIHLEARIEENKKLRKRFKILKDFQGSCRRKTSCALSQMIDPRVQLMSAGKPQAKDSTKKDKRFSAMYYGPAENSHVACYKMALTKFPPSVDRKKWTNVERENLGKGIRQQFQEMVLQISVDQIRSLTAIILVFGSGLQGFSADSDDLDNILASIKDLEITPEKVREFLPKVNWDKLASIYLRSRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPLPDTNLLCNTDDPKPAPKRNVKTRRIPVSRNEKSATGDAPKKRRSNNQRNQADATAQVGIANISSSFPEEVESIKPQRKRSRNGPHTAKRKKGVLELHSNSERCVEQNLETQSLEVQLNSKELERTSSDCTETVDEDGMESCEKKVAETLSKRDVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSILPADTALLASTTGDDIIERNGESVADKDLDDSNSFSLPHSCLELRATDSEGVNSYSVDEVTDKGHGVRKYQGRRKKNSKTSNKSQDLLVSCQQVELERSGMKELHCHNQSKKRNHNSTNTTSSLGTSEAVEEVDDCTLLGFLQKRVKRTNTTHDKKVDGSSSTTPLEVDNEDNDPTIASLLKDKLKRKRHQAPSGGG 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3340478 3353781 + Maker00022787 Lcy2g0399 625164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1148 1171 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1155 1170 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 122 137 - -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 664 708 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 769 813 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 717 763 IPR001005 -
Lcy2g0399 1239 Pfam Myb-like DNA-binding domain 611 656 IPR001005 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 868 901 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 78 107 - -
Lcy2g0399 1239 Gene3D - 663 713 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 842 952 - -
Lcy2g0399 1239 CDD SANT 772 814 IPR001005 -
Lcy2g0399 1239 CDD SANT 666 710 IPR001005 -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 764 818 IPR017930 -
Lcy2g0399 1239 SMART sant 663 712 IPR001005 -
Lcy2g0399 1239 SMART sant 768 816 IPR001005 -
Lcy2g0399 1239 SMART sant 499 607 IPR001005 -
Lcy2g0399 1239 SMART sant 610 660 IPR001005 -
Lcy2g0399 1239 SMART sant 716 765 IPR001005 -
Lcy2g0399 1239 Gene3D - 771 817 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1198 1212 - -
Lcy2g0399 1239 Gene3D - 714 768 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 588 655 IPR009057 -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 659 714 IPR017930 -
Lcy2g0399 1239 ProSiteProfiles SANT domain profile. 662 711 IPR017884 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 764 814 IPR001005 -
Lcy2g0399 1239 Gene3D - 608 658 - -
Lcy2g0399 1239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 716 763 IPR017930 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1098 1128 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 902 924 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 714 810 IPR009057 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 15 30 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 120 145 - -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 659 710 IPR001005 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 712 763 IPR001005 -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 1193 1218 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 42 57 - -
Lcy2g0399 1239 MobiDBLite consensus disorder prediction 15 60 - -
Lcy2g0399 1239 SUPERFAMILY Homeodomain-like 643 714 IPR009057 -
Lcy2g0399 1239 ProSiteProfiles Myb-like domain profile. 606 658 IPR001005 -
Lcy2g0399 1239 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 45 1234 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lcy2g0399 1239 CDD SANT 720 761 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0316 Lcy-Chr11:5168112 Lcy2g0399 Lcy-Chr2:3340478 0 dispersed
Lcy2g0399 Lcy-Chr2:3340478 Lcy2g0669 Lcy-Chr2:5720870 1.05E-15 dispersed
Lcy2g0399 Lcy-Chr2:3340478 Lcy6g1483 Lcy-Chr6:23266120 1.31E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19694 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0399 K09422 - csv:101216287 1369.76