Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0403 | ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATCTAAAGCGTGAGGTTCTCGGGGAGGGTACCTATGGTGTTGTATATAAGGCCATTGATACTCAGCTGGGAAGGGGGAATATGGCGACAGATTCTGGAACTATTTGGAGTATTTCTTCGAGTTTGGTCACTTTGACAGGTCAGACGGTTGCGATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATCCTAATATAATTGAGTTAATTGATGCCTTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGCTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCGAATGGGCAACTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGTCCAGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCACTAAGCAATATGGTTCCGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACGCCTTCTCAGTGGCCTGATATGTTATACCTACCTGATTATGTAGAGTTCCAATATGTTCCTGCACCCCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCGAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATATAGACCTGATAAACCTGATGACCATGTTAATGAGTTGCGAGAGGTAGCTGCTGGAAATACAAGCAAGAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA | 1320 | 42.12 | MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQLGRGNMATDSGTIWSISSSLVTLTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFSSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAYRPDKPDDHVNELREVAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3377461 | 3383414 | + | Maker00022035 | Lcy2g0403 | 625168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0403 | 439 | FunFam | Putative cyclin-dependent kinase 7 | 118 | 333 | - | - | |
Lcy2g0403 | 439 | MobiDBLite | consensus disorder prediction | 361 | 383 | - | - | |
Lcy2g0403 | 439 | MobiDBLite | consensus disorder prediction | 409 | 439 | - | - | |
Lcy2g0403 | 439 | SMART | serkin_6 | 14 | 317 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0403 | 439 | ProSiteProfiles | Protein kinase domain profile. | 14 | 317 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0403 | 439 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 117 | - | - | |
Lcy2g0403 | 439 | SUPERFAMILY | Protein kinase-like (PK-like) | 10 | 324 | IPR011009 | - | |
Lcy2g0403 | 439 | Gene3D | Transferase(Phosphotransferase) domain 1 | 118 | 333 | - | - | |
Lcy2g0403 | 439 | CDD | STKc_CDK7 | 13 | 330 | IPR037770 | GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro) | |
Lcy2g0403 | 439 | Pfam | Protein kinase domain | 55 | 317 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0403 | 439 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 155 | 167 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0403 | 439 | PANTHER | CELL DIVISION PROTEIN KINASE | 14 | 317 | IPR050108 | GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER) | |
Lcy2g0403 | 439 | MobiDBLite | consensus disorder prediction | 340 | 355 | - | - | |
Lcy2g0403 | 439 | MobiDBLite | consensus disorder prediction | 317 | 383 | - | - | |
Lcy2g0403 | 439 | MobiDBLite | consensus disorder prediction | 424 | 439 | - | - | |
Lcy2g0403 | 439 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0403 | Lcy-Chr2:3377461 | Lcy7g0583 | Lcy-Chr7:5163007 | 1.51E-79 | dispersed | |
Lcy2g0403 | Lcy-Chr2:3377461 | Lcy5g2387 | Lcy-Chr5:46674684 | 1.80E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65714 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0403 | K02202 | - | csv:101217645 | 795.423 |