Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0403 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATCTAAAGCGTGAGGTTCTCGGGGAGGGTACCTATGGTGTTGTATATAAGGCCATTGATACTCAGCTGGGAAGGGGGAATATGGCGACAGATTCTGGAACTATTTGGAGTATTTCTTCGAGTTTGGTCACTTTGACAGGTCAGACGGTTGCGATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATCCTAATATAATTGAGTTAATTGATGCCTTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGCTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCGAATGGGCAACTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGTCCAGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCACTAAGCAATATGGTTCCGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACGCCTTCTCAGTGGCCTGATATGTTATACCTACCTGATTATGTAGAGTTCCAATATGTTCCTGCACCCCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCGAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATATAGACCTGATAAACCTGATGACCATGTTAATGAGTTGCGAGAGGTAGCTGCTGGAAATACAAGCAAGAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1320 42.12 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQLGRGNMATDSGTIWSISSSLVTLTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFSSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAYRPDKPDDHVNELREVAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3377461 3383414 + Maker00022035 Lcy2g0403 625168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0403 439 FunFam Putative cyclin-dependent kinase 7 118 333 - -
Lcy2g0403 439 MobiDBLite consensus disorder prediction 361 383 - -
Lcy2g0403 439 MobiDBLite consensus disorder prediction 409 439 - -
Lcy2g0403 439 SMART serkin_6 14 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0403 439 ProSiteProfiles Protein kinase domain profile. 14 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0403 439 Gene3D Phosphorylase Kinase; domain 1 56 117 - -
Lcy2g0403 439 SUPERFAMILY Protein kinase-like (PK-like) 10 324 IPR011009 -
Lcy2g0403 439 Gene3D Transferase(Phosphotransferase) domain 1 118 333 - -
Lcy2g0403 439 CDD STKc_CDK7 13 330 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Lcy2g0403 439 Pfam Protein kinase domain 55 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0403 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0403 439 PANTHER CELL DIVISION PROTEIN KINASE 14 317 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Lcy2g0403 439 MobiDBLite consensus disorder prediction 340 355 - -
Lcy2g0403 439 MobiDBLite consensus disorder prediction 317 383 - -
Lcy2g0403 439 MobiDBLite consensus disorder prediction 424 439 - -
Lcy2g0403 439 Gene3D Phosphorylase Kinase; domain 1 2 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0403 Lcy-Chr2:3377461 Lcy7g0583 Lcy-Chr7:5163007 1.51E-79 dispersed
Lcy2g0403 Lcy-Chr2:3377461 Lcy5g2387 Lcy-Chr5:46674684 1.80E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65714 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0403 K02202 - csv:101217645 795.423