Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0410 AAAAAAAGAGTGAAAAAACAAACAAATATGGCAAAGGGAAAACTTTTCTCTGAGAAAATTAAGCTCATTCTTGCCTTGATTGCTTTGCAGCTCTGCTATGCAGGTTTTCACATTGTGTCCAGAGTTGCTTTAAACATTGGTGTTAGTAAAGTCGTCTATCCGGTTTACCGAAACGCGATCGCGTTAGCTTTGTTGAGTCCTTTTGCTTATTTCCTAGAGAAGAATGAAAGGCCTCCTCTTACTTTTTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTACTGGGAATCACTGCCAATCAAGGATTCTATCTCTTGGGACTAAACTATGCATCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCAATTACCTTTATCATGGCTTCTGTTCTGAGGCTTGAGCAAGTCAACTTCAGAAGGATAGATGGTTTGGCCAAGCTTTTGGGAACCATTGGAAGTGTTGGTGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAAGTACTTAACTCAAGGAAATGGCATCTTAGAGATGGATGACCCTACAAGTAAAGTGCAGAATTGGAGATGGGGTTGTATATACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTGTATTGAAAAAGTATCCAGCAAAGCTAACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGACTATCAGTACTGGAAAATCCAATCTGCAGAAGAGCTCTTCACAATCTTATATGCTGGTGTTGTAGCCTCTGGCATTGTGATCTCCCTCCAAACATGGTGCATCCACAAAAGTGATCCTGTTTTTGTTGCTGTCTTCCAGCCTCTCCAAACATTCCTAGTAGCCATCATGGCGTTTCTCATCCTTGGCGACCGGTTATTCTCGGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGACTTTACTTGGTTCTATGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAACAGGACAAGTCTTTGAAACAGCCCCTTTTGGAGGATCAAAGAGGGCACAAAGAAGACAATGTTGTTTCAGACATACCATGA 1119 42.27 KKRVKKQTNMAKGKLFSEKIKLILALIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFIMASVLRLEQVNFRRIDGLAKLLGTIGSVGGATVITLYRGPPLLHNKYLTQGNGILEMDDPTSKVQNWRWGCIYLLGHCLSWAGWMVFQASVLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVISLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYLVLWGKSKEKALEEQDKSLKQPLLEDQRGHKEDNVVSDIP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3422850 3424892 - Maker00022846 Lcy2g0410 625175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0410 372 PANTHER WAT1-RELATED PROTEIN 25 348 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy2g0410 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 147 - -
Lcy2g0410 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 340 - -
Lcy2g0410 372 Pfam EamA-like transporter family 197 335 IPR000620 GO:0016020(InterPro)
Lcy2g0410 372 Pfam EamA-like transporter family 22 146 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1941 Lcy-Chr13:38464860 Lcy2g0410 Lcy-Chr2:3422850 3.41E-50 dispersed
Lcy13g1942 Lcy-Chr13:38466026 Lcy2g0410 Lcy-Chr2:3422850 2.88E-12 dispersed
Lcy2g0410 Lcy-Chr2:3422850 Lcy9g1537 Lcy-Chr9:40474473 4.76E-71 dispersed
Lcy2g0410 Lcy-Chr2:3422850 Lcy9g2233 Lcy-Chr9:46880346 1.84E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0410 - - - 0.0