Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0412 ATGACCGATAGCGCTAAATCAGTTCCCGAAGACGAGACTTCGAAGCTTGAAACCAAGTCCAAGCGCGCCGCAGATGTCGAAGATGTTGATGTGACTGCGAAGAAGTTTAAAACGGAAGCTGCTGCTGTTGTAGCCAATGAAACTGGAGACTGTACCGACAGAAAGTTGGAAGCTGTTAATGGTGATGAAGAAAATAAGAGCATCAGGAGGGGAGTCCAGTTCGAAATCGAAGCGGATGCGGCTGAAGATAAAGGGTCTAGGCACACAATGGAGGATGCCTGGGTTTTGCTCTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGGTTCATAGTTCCAAAATTTCAATTAGTTTTTGTTTTTGTGGCTAGACGTTCACATTTTGCTATCTATGATGGACATGGGGGTCGGTTAGCTGCCGAGTATGCTCAAAAGCATTTGCATATGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAGAAGGCAATACTTGATGGGTTTCGGAAAACTGATGAGTCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCACTTGGGTATTAGGTCAAACGGTTTTTGTTGCTAATGTGGGTGATGCTAAAGCAGTTGTAGCCCGATCATTGACTGCTGATAAATCATCGAATAACCCTAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAGCATAAGGCAATCTACCCACAGGAAAGAGTTCGTATTCAAAAGATATCATCTGAAGATTCTGAACAAGACTGTACTAATGGATAG 819 44.2 MTDSAKSVPEDETSKLETKSKRAADVEDVDVTAKKFKTEAAAVVANETGDCTDRKLEAVNGDEENKSIRRGVQFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRFIVPKFQLVFVFVARRSHFAIYDGHGGRLAAEYAQKHLHMNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCTWVLGQTVFVANVGDAKAVVARSLTADKSSNNPNGGSSLKAIVLTREHKAIYPQERVRIQKISSEDSEQDCTNG 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3436845 3440245 - Maker00022830 Lcy2g0412 625177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0412 272 Pfam Protein phosphatase 2C 125 259 IPR001932 -
Lcy2g0412 272 Gene3D - 58 269 IPR036457 -
Lcy2g0412 272 SMART PP2C_4 59 270 IPR001932 -
Lcy2g0412 272 ProSiteProfiles PPM-type phosphatase domain profile. 77 272 IPR001932 -
Lcy2g0412 272 PANTHER PROTEIN PHOSPHATASE 2C 58 259 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy2g0412 272 SUPERFAMILY PP2C-like 74 260 IPR036457 -
Lcy2g0412 272 CDD PP2Cc 81 259 IPR001932 -
Lcy2g0412 272 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0412 Lcy-Chr2:3436845 Lcy6g0090 Lcy-Chr6:846158 6.79E-12 dispersed
Lcy2g0412 Lcy-Chr2:3436845 Lcy3g0879 Lcy-Chr3:31657179 2.30E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0412 K17500 - csv:101216467 386.341