Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0422 ATGGCTTTCAAACTCCAAACCCTCTTCAAACCCACTCTTATTTGCTTCTTTACATTCATCTTCTCGGCCTCAGCTTCTGCAACAACTTCGCTCTACCATAAGTTCCAGGCCTGTGCGCCTAGAAACTGTGGACATGGTCCTGATATCAGTTCCCCCTTTTGGATAGATGGTGTGCACGAACCTTCTTGCGGACACCCAGATTTCAAAATCGAATGCAATGATCAGAACCACCCAGTTCTTGAGATTTCCGACGAGAATTACATCGTAGAAGACATTATTTACCAAAACTGTTCGTCTCGGTTGGTCAGTACTGCAGCTTACGGCGATAAACATTCACAGGATTGCAGCCATTGCGAACAAAGCGATGTATATTGTAGTTTTGAAAACAATCAGCTTAAGTGTTATTGTAGCGATGGATCTCATTTCAAGAGCTGCAAACATGGTATTTTGGGTTACAATAGAGGTGACATCAGAAAAAAGATTATCATTGGCACATGCACTGGTGTTGGAGCCTTGCTTCTAACCTTACTTGTTCTTGGCATCTGCTACCGGTGGCGCCAGCTACGTCGTAGAAGGTCTCACACGGTGCCGTATGTGCAACGAAGCATTCCATCGAATCCATCTAATCCGTCGAATCCCCCTCCTGTTGAAGAACTTGAGAAAGGAGGTACCTACTTGGGCATTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACCAACCACTTTGACCCCAACAGAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTCACTCAAAGATGGGCGTTCCGTTGCTGTCAAACGGTTGTTTGAAAGCAATTTTAAGAGAGTTGAGCAGTTTATGAATGAGGTGGAGATCCTAGCCCGCCTGCGCCACCGCAACCTCGTTTCGCTTTACGGTTGCACCTCACGCAATAGCCGTGAGCTTCTGCTTGTGTACGAATATGTCCCGAACGGCACGGTGGCTGATCACCTCCATGGTAAACTAGCAAAGCCTGGTAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAACGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTATTGCGTTAAAGTAGCCGATTTCGGGTTGTCCCGTCTCTTCCCGCTCGACGTCACACACGTTTCAACTGCTCCACAAGGCACTCCAGGCTATGTCGATCCGGAATACCATCAGTGCTACCAACTGTCTGATAAAAGCGACGTCTTCAGCTTTGGCGTGGTACTAGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAGCCACGCATTACACGAACTCGTCGACCCTTTGCTCGGTTTCGAATCAGACTACAAAATCCAAGAGATGATAACCAGCGTAGCCGAGTTGGCATTTCGATGCCTGCAAAGCATGAAAGATGAGAGGCCAACGATGATGGAAGTCCTTGACACTCTGAACATCATACAGAAACAGAACACCGATAAAGGAAACGATCGAGACGCCGACATTTCTGCCAAGGACGACGCCGTGTTGCTGAAGAATGGCTATGGATCTTCTCCAAGTTCCCTGTCAGTATCTTGGGTTAGCAGCAGCACTTCCACAGCAACTAATGAAACCGTCAGCTCTTAA 1719 46.71 MAFKLQTLFKPTLICFFTFIFSASASATTSLYHKFQACAPRNCGHGPDISSPFWIDGVHEPSCGHPDFKIECNDQNHPVLEISDENYIVEDIIYQNCSSRLVSTAAYGDKHSQDCSHCEQSDVYCSFENNQLKCYCSDGSHFKSCKHGILGYNRGDIRKKIIIGTCTGVGALLLTLLVLGICYRWRQLRRRRSHTVPYVQRSIPSNPSNPSNPPPVEELEKGGTYLGIHLFSYKELEEATNHFDPNRELGDGGFGTVYYGSLKDGRSVAVKRLFESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRNSRELLLVYEYVPNGTVADHLHGKLAKPGKLPWSTRMKIAIETANALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPLLGFESDYKIQEMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNTDKGNDRDADISAKDDAVLLKNGYGSSPSSLSVSWVSSSTSTATNETVSS 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3532563 3534828 + Maker00022505 Lcy2g0422 625187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0422 572 FunFam Wall-associated receptor kinase-like 20 320 528 - -
Lcy2g0422 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0422 572 Gene3D Phosphorylase Kinase; domain 1 217 319 - -
Lcy2g0422 572 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 216 319 - -
Lcy2g0422 572 Pfam Wall-associated receptor kinase galacturonan-binding 38 100 IPR025287 GO:0030247(InterPro)
Lcy2g0422 572 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 111 562 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy2g0422 572 Pfam Protein kinase domain 246 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0422 572 ProSiteProfiles Protein kinase domain profile. 243 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0422 572 MobiDBLite consensus disorder prediction 545 572 - -
Lcy2g0422 572 SMART serkin_6 243 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0422 572 Gene3D Transferase(Phosphotransferase) domain 1 320 542 - -
Lcy2g0422 572 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524(InterPro)
Lcy2g0422 572 SUPERFAMILY Protein kinase-like (PK-like) 228 522 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2317 Lcy-Chr10:46804636 Lcy2g0422 Lcy-Chr2:3532563 1.85E-148 dispersed
Lcy1g1044 Lcy-Chr1:9406711 Lcy2g0422 Lcy-Chr2:3532563 6.16E-86 dispersed
Lcy2g0422 Lcy-Chr2:3532563 Lcy3g0133 Lcy-Chr3:3385088 6.94E-158 dispersed
Lcy7g0235 Lcy-Chr7:2049762 Lcy2g0422 Lcy-Chr2:3532563 2.86E-85 transposed
Lcy2g0422 Lcy-Chr2:3532563 Lcy7g0490 Lcy-Chr7:4359456 1.62E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65715 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0422 - - - 0.0