Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0424 ATGGCGACGCCGTTGACAGGGCTACACCACCGCGACGGTGGCGGAGGAGTGGCTTTTTTGGCTAATTCTGTAAATAAAATGGATTCCGCGTCGTCTCCCTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCGCAGTCTCCTATTCTTATTTTCCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGACACGCTTCACCGGCTGGCCATGGCGTTCGCCACCGGCCAGAGAGCAGATATTCGCCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTCGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTGTTTGATCATCTTTTCGAGCTTCTTAATTCTAATACAAGAAATGATGAAAGTTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTAGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTATTTCACCTGATGAAGCTCAGGATCTACAGAAATGTTTAATCAAGGTAGTCCCGGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAACAAGAAGTTGTGACAACGTAACAACAAGTTGCTTTGATGATTCTCCAGTTGGATATTATACAGATCCTACTACTGATACATCAAATCATCAAACAGAAAATGTAAATTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAATATTTGGAGCCAAGTTCTGATATGTCGGATTATGTGGTAACTCATCCAATCAATGAAATATTGTTTTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCCAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTTTCATAGTATTGCTGAGGATAAGGTAATCTTTCCGGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAATTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCATTTCCATAATGAGGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTGTTGTATCAAAGCTTGTGCATGATGCCTTTGAAACTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCAAGAGCGGTTGGCTGTTGTGCAGTTAAAAGGCTTACTACTGACATTGAAGAAGACATTGTCCAATCATCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGTTAATGTTAAGAGGCCAGCCATACGAAACGCTCCCATTCCATGCAAAAGTTGTGATGGCTGTATTTCTTCAGAGACTGTTAATGTCCAGCAACAATGTTGTAGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTGAGTTCTATCTTCACGTCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATAGTGCCTCTTCTGATGTTGGGTCTGCAGGACGTCCCATAGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGGACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCATTGGAATCCAAAGAGACATTGCATAATGTAAGTCACTCGTATACACTAGACCATAAACAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCACGAAAGTCTGCATGAGGTTCCCTTGGATGAGAGTTTTTCTAGAAGTGATGTTGGCTTTGTTAACGTGGTGGGGAAGGATTGTGATAGAAAGTACCACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGCCGTATTATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACACAGGATGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACCAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCATCTACATTAAATGATCAAACATTAGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATCTTTCGTATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGATTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAACGTAGAAGATAATTCCAATGGTGAAAATGTAGCAGGACGGACACCATCTTTTCGCTGTGCCGAGAAAAAGATATTTGGATGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACCATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGCCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTCGATGCCTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTACAGGGAACGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGCACATCACGGTTCCATTGGCTGTATCATAAATGTGGGTTTTGTGGATCATACAACACCCGGGTAATCAAGAATGATATCACACATGCTGCCTGCCCTTCTTCCAATCAATGA 3771 42.16 MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEAQDLQKCLIKVVPEEKLLQQVIFTWMETRSCDNVTTSCFDDSPVGYYTDPTTDTSNHQTENVNCACELTSHGKRKYLEPSSDMSDYVVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTTDIEEDIVQSSCSCAPALIAREGPKSDPETNVNVKRPAIRNAPIPCKSCDGCISSETVNVQQQCCSDQSCHVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDSASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFSRSDVGFVNVVGKDCDRKYHELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASTLNDQTLEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGENVAGRTPSFRCAEKKIFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDITHAACPSSNQ 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3555866 3565704 + Maker00022762 Lcy2g0424 625189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0424 1256 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Lcy2g0424 1256 Pfam CHY zinc finger 1007 1075 IPR008913 GO:0008270(InterPro)
Lcy2g0424 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 696 1242 - -
Lcy2g0424 1256 SMART ring_2 1136 1177 IPR001841 -
Lcy2g0424 1256 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270(InterPro)
Lcy2g0424 1256 CDD RING-H2_Pirh2-like 1135 1178 - -
Lcy2g0424 1256 CDD Hr-like 51 177 - -
Lcy2g0424 1256 Pfam Ring finger domain 1135 1177 IPR001841 -
Lcy2g0424 1256 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
Lcy2g0424 1256 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Lcy2g0424 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Lcy2g0424 1256 CDD Hr-like 663 823 - -
Lcy2g0424 1256 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Lcy2g0424 1256 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270(InterPro)
Lcy2g0424 1256 SUPERFAMILY RING/U-box 1135 1181 - -
Lcy2g0424 1256 CDD Hr-like 313 441 - -
Lcy2g0424 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Lcy2g0424 1256 Gene3D nmb1532 protein domain like 656 889 - -
Lcy2g0424 1256 Gene3D - 1207 1248 - -
Lcy2g0424 1256 Gene3D nmb1532 protein domain like 46 196 - -
Lcy2g0424 1256 Gene3D nmb1532 protein domain like 312 459 - -
Lcy2g0424 1256 Pfam Hemerythrin HHE cation binding domain 661 823 IPR012312 -
Lcy2g0424 1256 Pfam Hemerythrin HHE cation binding domain 310 443 IPR012312 -
Lcy2g0424 1256 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1444 Lcy-Chr11:38356196 Lcy2g0424 Lcy-Chr2:3555866 2.91E-11 transposed
Lcy2g0602 Lcy-Chr2:5146359 Lcy2g0424 Lcy-Chr2:3555866 4.92E-266 transposed
Lcy2g0424 Lcy-Chr2:3555866 Lcy7g0487 Lcy-Chr7:4323019 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0424 K16276 - csv:101215023 2403.25