Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0460 ATGGATGCTCGCCGAGGCTCCCGCATCGTCAACCCCAAAGTTCGTCAGGTCGGCTTCTTCACTCTCGACGCTCCTAATCCCCCCGGCCGCTCCCTCTCCGGCCCGGCCGACTGTCTCCCTTCTCAACAATCCCTCTCTCCTCCCACCAATTCCTTGTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGATAACCTTGCCTCTCGCTCTGCTGTTCTTCCGGTTCCCGCTCCGGCCAATTGGAGGAATTCCGCCGATCAGATTCCTGTTGGCAGCTATAACCCTTCCGAGACCCTCCTTGCCACCTCCCCTGTGGCCTCGCCTTCCAGTAGAACTGGGGACGAAGAGCTCGAGATGTCGGAGGACTCTTCCACCTCCGTTTGGTATCGCCGGAGCGGTTCCGGGAAGATTGCGTCCAGCTTTCCTGGCCTTGGAATCCACGTGGCGGCTAAGGCGTCGGAGAATTCGCAAGCGGTGCCTCTTAGGACGTTGGAACCTAACAAGCCTGCTGGAGTTGCAGAAAAGAATGGAGGGGCATCCACAGAGATACAGAATCAACAACCACCATCAAGTTCGAAACCCCTGAAGGCAAAAACAACAAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCTGCAAAAGTTTCTGCAAAAGGTGAGGCGAATAAGTCAGGTACTGCTCCTGGTAAAGCTGTGAAGCAGCCTTCGGCTATGAAAGACATCACTGCTACACCTTCGGTTGCATCTATTGACAAAAGGGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCTCGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACATGACACCATTCATCCTGCCATTTACCAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATCGCAATGCTTCATGCATTTCAACAGGCAATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGCCTATGTTTCATTCTTTAATGAGTGCAGGCCATTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCGCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAGAAGATTATAATTGCAGATGAAGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCTCACGAGCTTGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTCATAGCAAGGGGCCTAAGTTGTACCTACACTCATATAAATGCTATTTCTTATGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGTGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGACCCAGATGCTATCTCAAAGGTCCCAGGAAGGAAGGATATTAATTATTTAGATAATTTGACTGCTAAAGATCAACTACAACTTCTAAATTTAATGTATGACGCTACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGTGGTCAGAATTGAGA 1914 46.6 MDARRGSRIVNPKVRQVGFFTLDAPNPPGRSLSGPADCLPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVLPVPAPANWRNSADQIPVGSYNPSETLLATSPVASPSSRTGDEELEMSEDSSTSVWYRRSGSGKIASSFPGLGIHVAAKASENSQAVPLRTLEPNKPAGVAEKNGGASTEIQNQQPPSSSKPLKAKTTKAERRALQEAQRAAKVSAKGEANKSGTAPGKAVKQPSAMKDITATPSVASIDKRGGDRTLDKERKKDAPPPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQHDTIHPAIYQVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGAYVSFFNECRPLSVSMGNAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIARGLSCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINYLDNLTAKDQLQLLNLMYDATPSDYISMIVTDYGMWSELR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3932204 3937898 + Maker00022730 Lcy2g0460 625225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0460 638 Gene3D - 439 637 IPR042529 -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 94 128 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 20 63 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 94 111 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 179 197 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 255 277 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 36 51 - -
Lcy2g0460 638 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 46 634 - -
Lcy2g0460 638 MobiDBLite consensus disorder prediction 154 277 - -
Lcy2g0460 638 SUPERFAMILY NagB/RpiA/CoA transferase-like 299 635 IPR037171 -
Lcy2g0460 638 Pfam Initiation factor 2 subunit family 346 634 IPR000649 GO:0044237(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0459 Lcy-Chr2:3916800 Lcy2g0460 Lcy-Chr2:3932204 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0460 K03680 - csv:101215104 1144.03