Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0463 ATGCATATATCAACAATGCCCTTCCTCCACCACTCCATCGCCTTCTTCGATTCCGATCTTCTTCAATCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCGTATTTATTTTTTCCGTTGGCTTCTGGGACGCCGTTCGGTATGGAGCCGATGGACATAGTTGGAAAGTCGAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACTAAAATTATTAAAGAGATGTTACCCCCTGATGTACGTGTCGCAAGAGATGCCCAAGATCTTCTGATTGAGTGCTGTGTAGAACTGCACTCTCTTTATTTTGGTGTTCTTGCAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTACTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCCTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 645 44.96 MHISTMPFLHHSIAFFDSDLLQSVGSPSSFSGFAYLFFPLASGTPFGMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVELHSLYFGVLAEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3949727 3953221 - Maker00022023 Lcy2g0463 625228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0463 214 MobiDBLite consensus disorder prediction 198 214 - -
Lcy2g0463 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 105 137 IPR003958 -
Lcy2g0463 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 97 IPR003958 -
Lcy2g0463 214 PANTHER PROTEIN DR1 HOMOLOG 48 212 IPR044255 -
Lcy2g0463 214 FunFam Negative cofactor 2 beta 53 201 - -
Lcy2g0463 214 SUPERFAMILY Histone-fold 59 200 IPR009072 GO:0046982(InterPro)
Lcy2g0463 214 MobiDBLite consensus disorder prediction 192 214 - -
Lcy2g0463 214 Gene3D Histone, subunit A 51 202 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0463 Lcy-Chr2:3949727 Lcy3g1707 Lcy-Chr3:44383803 4.73E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19701 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0463 K21751 - csv:101214627 294.664