Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0463 ATGCATATATCAACAATGCCCTTCCTCCACCACTCCATCGCCTTCTTCGATTCCGATCTTCTTCAATCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCGTATTTATTTTTTCCGTTGGCTTCTGGGACGCCGTTCGGTATGGAGCCGATGGACATAGTTGGAAAGTCGAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACTAAAATTATTAAAGAGATGTTACCCCCTGATGTACGTGTCGCAAGAGATGCCCAAGATCTTCTGATTGAGTGCTGTGTAGAACTGCACTCTCTTTATTTTGGTGTTCTTGCAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTACTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCCTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 645 44.96 MHISTMPFLHHSIAFFDSDLLQSVGSPSSFSGFAYLFFPLASGTPFGMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVELHSLYFGVLAEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3949727 3953221 - Maker00022023 Lcy2g0463 625228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0463 214 MobiDBLite consensus disorder prediction 198 214 - -
Lcy2g0463 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 105 137 IPR003958 -
Lcy2g0463 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 97 IPR003958 -
Lcy2g0463 214 PANTHER PROTEIN DR1 HOMOLOG 48 212 IPR044255 -
Lcy2g0463 214 FunFam Negative cofactor 2 beta 53 201 - -
Lcy2g0463 214 SUPERFAMILY Histone-fold 59 200 IPR009072 GO:0046982(InterPro)
Lcy2g0463 214 MobiDBLite consensus disorder prediction 192 214 - -
Lcy2g0463 214 Gene3D Histone, subunit A 51 202 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0463 K21751 - - csv:101214627 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0463 Lcy-Chr2:3949727 Lcy3g1707 Lcy-Chr3:44383803 4.73E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0463 . 48 207 CCAAT-DR1 Transcription Factor Family AT5G08190 78.8 5.8e-61 231.1
Lcy2g0463 . 48 209 CCAAT-DR1 Transcription Factor Family AT5G23090 77.8 4.2e-64 241.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19701 None None None None Lcy TF