Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0489 ATGCAAGATATCCACTCGATCGCCGGAGGAAGCCGCCTGTTCGGCGGCGGCGGCGGCGGAGACCGTCGTCTGAGGCCCCATCTCCACCACCATCAGAACCACCAAGCTTTGAAGTGCCCGAGGTGTGATTCTCTCAATACGAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCGCGTCACTTCTGCAAGAGCTGCCGACGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACAAAACGCTCCTCCTCCTCCAAGGCCAAGTCCTCCTCGGACGCGGCGGCGGCGGTGGCTCCACCTCCGCCGCCGCCTCCTCCTCTCCGCGAACGGAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCGACGACCACGACCGCCGCGGCGGCGGCTACCGAGGCGGTCTCGGCTCCGTCGTCGAATTCGGCGTCGACTCTATTGAGCGTACAGGACTCGAAGTTGTTCCCGGCTCCGAGCACGAACCCTAGCTTCGAGACGGCGGCGGCGGCGGTGTCGGAGTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGGCGTTCGGATTCGGGAACATGGCGGACGTGACGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCGGCGAATCAATGGGCGCCACAGAGAATGATGAACGTTAACGACGAACTGAAGATGCAGGAGATCGCAGGCGGCGGAGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTACAGAATGGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGCGATCATCAGGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGACCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 969 58.0 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKAKSSSDAAAAVAPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLSVQDSKLFPAPSTNPSFETAAAAVSECGIFSEIGSFTSLITSSNETLAFGFGNMADVTTPFAMNHPFQNQSANQWAPQRMMNVNDELKMQEIAGGGGYMDQTAHVDPSGLQNGRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWTDQDQPNLYLP 322
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 4201432 4202400 + Maker00022243 Lcy2g0489 625254
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0489 322 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0489 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 221 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0489 322 MobiDBLite consensus disorder prediction 1 26 - -
Lcy2g0489 322 MobiDBLite consensus disorder prediction 81 148 - -
Lcy2g0489 322 MobiDBLite consensus disorder prediction 126 148 - -
Lcy2g0489 322 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0489 322 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0489 Lcy-Chr2:4201432 Lcy5g2222 Lcy-Chr5:45242219 1.00E-33 dispersed
Lcy2g0489 Lcy-Chr2:4201432 Lcy5g2464 Lcy-Chr5:47399432 8.24E-29 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19704 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0489 - - - 0.0