Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0489 | ATGCAAGATATCCACTCGATCGCCGGAGGAAGCCGCCTGTTCGGCGGCGGCGGCGGCGGAGACCGTCGTCTGAGGCCCCATCTCCACCACCATCAGAACCACCAAGCTTTGAAGTGCCCGAGGTGTGATTCTCTCAATACGAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCGCGTCACTTCTGCAAGAGCTGCCGACGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACAAAACGCTCCTCCTCCTCCAAGGCCAAGTCCTCCTCGGACGCGGCGGCGGCGGTGGCTCCACCTCCGCCGCCGCCTCCTCCTCTCCGCGAACGGAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCGACGACCACGACCGCCGCGGCGGCGGCTACCGAGGCGGTCTCGGCTCCGTCGTCGAATTCGGCGTCGACTCTATTGAGCGTACAGGACTCGAAGTTGTTCCCGGCTCCGAGCACGAACCCTAGCTTCGAGACGGCGGCGGCGGCGGTGTCGGAGTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGGCGTTCGGATTCGGGAACATGGCGGACGTGACGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCGGCGAATCAATGGGCGCCACAGAGAATGATGAACGTTAACGACGAACTGAAGATGCAGGAGATCGCAGGCGGCGGAGGGTACATGGATCAGACGGCTCACGTCGATCCATCAGGGCTACAGAATGGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGCGATCATCAGGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGACCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA | 969 | 58.0 | MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKAKSSSDAAAAVAPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLSVQDSKLFPAPSTNPSFETAAAAVSECGIFSEIGSFTSLITSSNETLAFGFGNMADVTTPFAMNHPFQNQSANQWAPQRMMNVNDELKMQEIAGGGGYMDQTAHVDPSGLQNGRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWTDQDQPNLYLP | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4201432 | 4202400 | + | Maker00022243 | Lcy2g0489 | 625254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0489 | 322 | ProSitePatterns | Zinc finger Dof-type signature. | 39 | 75 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy2g0489 | 322 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 29 | 221 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy2g0489 | 322 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Lcy2g0489 | 322 | MobiDBLite | consensus disorder prediction | 81 | 148 | - | - | |
| Lcy2g0489 | 322 | MobiDBLite | consensus disorder prediction | 126 | 148 | - | - | |
| Lcy2g0489 | 322 | Pfam | Dof domain, zinc finger | 35 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy2g0489 | 322 | ProSiteProfiles | Zinc finger Dof-type profile. | 37 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0489 | Lcy-Chr2:4201432 | Lcy5g2222 | Lcy-Chr5:45242219 | 1.00E-33 | dispersed | |
| Lcy2g0489 | Lcy-Chr2:4201432 | Lcy5g2464 | Lcy-Chr5:47399432 | 8.24E-29 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19704 | None | None | None | None | Lcy | TF |
Pathway information