Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0498 ATGGCACAGCAAAGAACAATTGCATCCTCTGAGTTCAGCTGGTTGAAGCTTTTGATCCCTGCAAAACTTCAAGCCATGGAAGTTAATACCTACAGTGATCTATTACACAGAATTCTCTTTCAAAGGGAATGTTACTCGGCTCGACAGCAAAGAATTGTACTCTTAGCACTTCTGGTCTTTACAGCTTTCTATTCGACCGGGGCTTATGACCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATGTAGTCTCTTGGACGGCAGATGGATATGTTGCTGCAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACGACAGAGCAAGGAGATTGTTCCAAGTTTAAAGGAAATGTGCCTCACTGTTGCAAGAAAACCCCAATAGTTGTCGATTTGCTCCCTGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCATCTTGGGGACAGGATCCAGTAGGTTCAGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCTGGCACTTCAAACAAAACTGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAGATTGTGCCTTCTACAGTCTTCCTCACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGTACTTACTCGCAATTTCTGGCTTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACGTCTTGCCCAACCTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTATTGCACAAGGATGGAATAAATACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTATTCGAGTACACTGGCATGTAAAGATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGCTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTACGGCATGAAGTTCTACAATGATCTCTTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTAATGAAGAAGGACAGGGATACTTTTACCTTCAAGCAGGGTTGGGCATTTCCAAGGAAAGTATACTTCAACGGCGACGAATGTCAGATGCCACCGCCAGAATCATACCCATATCTACCCAACTCTGCTCCTGAAGGATCCAGTGCAGTTACCAAATTGACCACCACCTTGCTTTTGATAATCTGGTTTTTGTGGTGA 1446 44.4 MAQQRTIASSEFSWLKLLIPAKLQAMEVNTYSDLLHRILFQRECYSARQQRIVLLALLVFTAFYSTGAYDPLDPNGNITIKWDVVSWTADGYVAAVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPIRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDRDTFTFKQGWAFPRKVYFNGDECQMPPPESYPYLPNSAPEGSSAVTKLTTTLLLIIWFLW 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4281585 4285552 + Maker00022839 Lcy2g0498 625263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0498 481 PIRSF COBRA 41 481 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy2g0498 481 Pfam COBRA-like protein 92 255 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy2g0498 481 PANTHER PROTEIN COBRA 55 475 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0498 Lcy-Chr2:4281585 Lcy3g0271 Lcy-Chr3:8925377 7.97E-279 dispersed
Lcy2g0498 Lcy-Chr2:4281585 Lcy2g0499 Lcy-Chr2:4284701 3.66E-236 tandem
Lcy3g0926 Lcy-Chr3:32577282 Lcy2g0498 Lcy-Chr2:4281585 2.97E-140 transposed
Lcy6g0583 Lcy-Chr6:5520833 Lcy2g0498 Lcy-Chr2:4281585 2.39E-166 transposed
Lcy2g0498 Lcy-Chr2:4281585 Lcy5g2474 Lcy-Chr5:47482896 1.78E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0498 - - - 0.0