Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0499 ATGAGGTCTCGGCGCTTCGCTTCCACTGGATCCGTCGCCGAACTTACCGGCTTTTCCGTCGTGCTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTACGATGCACTTGATCCCAACGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACCATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAAGAAGTAATTTGGAGCATGATGGGAGGCCAAACAACAGAACAGGGTGACTGTTCAAGATTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAATTCCTGGGCCCAAGACCCAGCCAATGCAGCTAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAGACTCCCCAAAAACTTCACTCTTAAAGCGCCAGGACCTGGATACACTTGTGGTCCGGCAAAGATTGTGAAGCCAACCAAATTTATGTCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCCTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAACACGGCGGGTCCTGGGAGCTGTGTGGATCCAGATACTCCACATTTAGCTTCAGTAGTATCAACTCCTGATAAATCGGGCAACATTGAACCCCTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGAGTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGATAATGTAACTCAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCCATGCTATGGGGATTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAGAACACTTTCACTTTTGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGACAACTGTGTGATGCCACCTCCAGATGCCTATCCCTATTTGCCAAATGCCAGTTCCCGACCAGCTATATCTCTACTCATGACAATCTTAATATCTTTGGCATTATTGTTCAATTTTGAACTATAA 1368 44.44 MRSRRFASTGSVAELTGFSVVLLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFMSGDKRRITQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGPGSCVDPDTPHLASVVSTPDKSGNIEPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYTLWNLVVQHPNFDNVTQLFSFNYKSLSPYGDLNDTAMLWGFKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLMTILISLALLFNFEL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4284701 4287632 - Maker00022745 Lcy2g0499 625264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0499 455 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy2g0499 455 PANTHER PROTEIN COBRA 24 447 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lcy2g0499 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0499 Lcy-Chr2:4284701 Lcy3g0307 Lcy-Chr3:9754620 3.70E-281 dispersed
Lcy2g0498 Lcy-Chr2:4281585 Lcy2g0499 Lcy-Chr2:4284701 3.66E-236 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0499 - - - 0.0