Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0510 ATGGCGAACACACCAACCACCGGTGGGATTTCAAAGATTTTGGCGAATCCATCCCCGGATTCTCCCTCCGATGTCCCCGAGGTCGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGCTGTTTATGGGTTTGGATTCTCAGTCTAGAGCATGTGCTGACTGGTTTACTGCTAGCGACGGGGATATGAAGCTAAAGGCCATTCTTCCATCTAACCTTACGTCCGAGGTCATATCTGGAAACATTCAAAATTTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATCCCGAACAAGCCAGAAAAGTATCTAATCGTGACGAAATGTGAGGTGGTATCTACTGCTCTAGAAAAGGAGGTAAAAATTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCGAAACCAGAGTTCGATGACAAGAGCGCATTTAATAATGGATCTGGTATTCTTTTGAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACAAATATGGCACCAGCTGCACGGATGTCCATGACAAGGCGAGTTCATCCCCTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACAGACAAGGGAAACCTACGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGACGAAGATGGTACGCAAATACAAGCAACGATGTTCAATGAAGCTGCAAGGAAGTTCTATGAAAAGTTTGCCCTCGGCAAAGTTTACTACATTTCCAGGGGGACTTTGAAAGTTGCTAATAAGAAGTTTAAGACAGTTGAAAATGATTATGAAATGACTTTAAATGTGAATTCTCAAGTAGACGAGGTCAGCAATGAAGCAGCTTTCGTTCCTGAAACAAAATTTAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGATCTTGTTGATGTTATTGGAGTTGTTCAAAGCGTTTCTCCAACGATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCGACTAGTGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGTTGGAGATTTTCAAGGTGTATCTTTGTCTACAATAAGTAGAAGCTCAATTTTAATAAATCCAGACATACAGGAAGCACACCATTTGAGATCCTGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTAAGCTCTGGCCTGAGCCCATCATCCAAGAGTGGGTCGAGGTCCATGTACTCTGACCGGATCTCCCTCTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCCTGTTCTTCAGCATCAGAGCATATGTTAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGCAACAAGAAGGTAACCGAAGCCATTGGATCTGGATACTGGTGCGAAGGTTGCCAGAAGAATGACGAAGAATGCAATTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGCGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATTATTGGATGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACCTGGGTTCCCCATTTATTTCGAGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTTGCTTCTGAATCTAGATTTTTGCTAGAAGAGATAGCCAAGATGAAAGCTTCCTAG 1917 42.51 MANTPTTGGISKILANPSPDSPSDVPEVVLQVLDLKATGNRYMLFMGLDSQSRACADWFTASDGDMKLKAILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSTALEKEVKIEVKKEEADIVLKPKPEFDDKSAFNNGSGILLKPKQELVAKSAAQIVHEQRTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFALGKVYYISRGTLKVANKKFKTVENDYEMTLNVNSQVDEVSNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATSVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSILINPDIQEAHHLRSWYDSEGKAISMASVSSGLSPSSKSGSRSMYSDRISLSHILQNKSLGEEKPLFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECNLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFASESRFLLEEIAKMKAS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4371207 4374737 - Maker00022225 Lcy2g0510 625275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0510 638 PANTHER REPLICATION FACTOR A 1, RFA1 193 613 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lcy2g0510 638 FunFam Replication protein A subunit 191 300 - -
Lcy2g0510 638 CDD RPA1_DBD_C 470 634 IPR047192 -
Lcy2g0510 638 Pfam Replication factor-A C terminal domain 482 628 IPR013955 -
Lcy2g0510 638 Gene3D - 6 128 IPR012340 -
Lcy2g0510 638 Pfam Replication factor-A protein 1, N-terminal domain 6 118 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy2g0510 638 Coils Coil 553 573 - -
Lcy2g0510 638 NCBIfam replication factor-a protein 1 (rpa1) 6 634 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy2g0510 638 CDD RPA1_DBD_A 194 297 - -
Lcy2g0510 638 SUPERFAMILY Nucleic acid-binding proteins 310 439 IPR012340 -
Lcy2g0510 638 FunFam Replication protein A subunit 448 635 - -
Lcy2g0510 638 Gene3D - 305 445 IPR012340 -
Lcy2g0510 638 FunFam Replication protein A subunit 4 129 - -
Lcy2g0510 638 FunFam Replication protein A subunit 304 443 - -
Lcy2g0510 638 SUPERFAMILY Nucleic acid-binding proteins 461 635 IPR012340 -
Lcy2g0510 638 CDD RPA1_DBD_B 327 433 - -
Lcy2g0510 638 MobiDBLite consensus disorder prediction 1 18 - -
Lcy2g0510 638 SUPERFAMILY Nucleic acid-binding proteins 193 301 IPR012340 -
Lcy2g0510 638 MobiDBLite consensus disorder prediction 1 23 - -
Lcy2g0510 638 Gene3D - 189 297 IPR012340 -
Lcy2g0510 638 Gene3D - 446 635 IPR012340 -
Lcy2g0510 638 SUPERFAMILY Nucleic acid-binding proteins 3 127 IPR012340 -
Lcy2g0510 638 Pfam OB-fold nucleic acid binding domain 205 288 IPR004365 GO:0003676(InterPro)
Lcy2g0510 638 Pfam Replication protein A OB domain 324 419 IPR031657 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0510 Lcy-Chr2:4371207 Lcy6g2277 Lcy-Chr6:47469955 8.59E-88 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0510 K07466 - csv:101208545 1087.4