Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0527 | ATGGACGAAATTTCCCTCATCGTCGCCGCTACCTTAACCCTGGCCTCCGCCGTCCTCCTCCACCGTTTTTTAGTCCTCTGCCGCAAATTCCGAACTCTCCGCCTCCCGCCGGGCCCGAAACCATGGCCGATCGTCGGAAACTTGCTGCAAATCGGCGGAGCACCTCTCCACTCCACTCTCGCCACCATGGCCTGTGAGTACGGACCTCTGATGTACCTACGATTCGGATCCGTCGACGTCATCGTGGCGGCGTCAGCGGCTGTGGCAGAGCAAACCTTGAAGATTCGCGACACTAATTTCCTCAGCCGGCCGCCGAACGCCGGCGCTAAATATATTGCTTATAATTGTCAGGATATGGTTTTTGCGCCGTACGGTCCACGTTGGCGGTTACTCCGGAAGATCAGCACCGTTCATCTCTTCTCATCAAAAGCCCTAGATGATCATCGGCGTGTACACGAGGAGGAGGTGGCGGTGCTAGTTGAAGCCGTTGGGAGGGCCGGAGAAGCGCCGGTGGACTTATGGAGGTTGCTGACCGTCTGCCTAGCGAATGCGGTTGGACGAGCAATTATCGGGCAGCGTGTTTTCGGCGATGGCGATCCGAAGGCGGACCGGTTTATGGCAATGGTGGAGCAAGTAATGGTGCTGTCGGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGCGTGGCCGGTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTCTTGACCAAGATCCTCGACGACAACCGGAATTTATTGGCCGACTCCGGCGGCAGCGGCGGCAGCCAACATCAAGACTTGCTGAGCATGCTTCTTTCCTCCAAGGACCAAGCTGAAGATGAGAACGAGAAGCTGAGTGACACTAAGATCAAGGCCTTGTTGTTGAACATGTTTACAGCTGGAACCGACACGTCAGCAAGCACAGTAGAGTGGGCCCTAGCAGAGCTGATCAGGCAACCGAAAATGCTGGCCCAGGCCCAACAAGAACTGGACTCCGTAGTGGGCCGAGATTTGTTAGTTTCCGATTTGGACCTTCCACGACTGGGCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCACATGGCCGCCGAGAGCTGCGAAATCAACGGCTTCCACATCCCTAAAGGCTCCACTCTCTTGGTCGACGTATGGGCCATCGGTCGTGACCCAAAGAAATGGGCCGACCCACTTGAGTTCAGGCCCAATAGGTTCCTCCCTGGCGGTGAGAAGGCCCACGTCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTTGGGGCTGGGCGGAGGATCTGCGTGGGCATGCGTTTGGGCCTGAGGATGGTTCAGATGCTAACTGCCACGTTGGTCCATTCCTTTGATTGGGCCTTGCCTAATGGGCTTTCGCCTGATAAGTTGAACATGGACGAGGCCTTTGGGCTCACTCTACGTCGGGCCCAGCCCTTGGTTCTGCATCCACGGCCCAGATTATCGCCTGAGGTTTATCGAGGATTGCCTTCCATTGGTTAA | 1569 | 56.15 | MDEISLIVAATLTLASAVLLHRFLVLCRKFRTLRLPPGPKPWPIVGNLLQIGGAPLHSTLATMACEYGPLMYLRFGSVDVIVAASAAVAEQTLKIRDTNFLSRPPNAGAKYIAYNCQDMVFAPYGPRWRLLRKISTVHLFSSKALDDHRRVHEEEVAVLVEAVGRAGEAPVDLWRLLTVCLANAVGRAIIGQRVFGDGDPKADRFMAMVEQVMVLSGKFNPGDFFPSLEWLDLLGVAGEMKKVHKWFDDFLTKILDDNRNLLADSGGSGGSQHQDLLSMLLSSKDQAEDENEKLSDTKIKALLLNMFTAGTDTSASTVEWALAELIRQPKMLAQAQQELDSVVGRDLLVSDLDLPRLGYLQAVVKETFRLHPPTPLSLPHMAAESCEINGFHIPKGSTLLVDVWAIGRDPKKWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMRLGLRMVQMLTATLVHSFDWALPNGLSPDKLNMDEAFGLTLRRAQPLVLHPRPRLSPEVYRGLPSIG | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4539889 | 4543154 | - | Maker00021738 | Lcy2g0527 | 625292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 442 | 452 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 452 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 402 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | P450 superfamily signature | 443 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | P450 superfamily signature | 452 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 445 | 454 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy2g0527 | 522 | SUPERFAMILY | Cytochrome P450 | 36 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | Pfam | Cytochrome P450 | 36 | 495 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | Gene3D | Cytochrome P450 | 25 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0527 | 522 | Coils | Coil | 277 | 297 | - | - | |
| Lcy2g0527 | 522 | FunFam | Cytochrome P450 82C4 | 27 | 505 | - | - | |
| Lcy2g0527 | 522 | PANTHER | CYTOCHROME P450 98A9 | 8 | 516 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g2053 | Lcy-Chr11:44145708 | Lcy2g0527 | Lcy-Chr2:4539889 | 2.19E-119 | dispersed | |
| Lcy2g0527 | Lcy-Chr2:4539889 | Lcy5g2175 | Lcy-Chr5:44799016 | 7.73E-119 | dispersed | |
| Lcy2g0527 | Lcy-Chr2:4539889 | Lcy2g0528 | Lcy-Chr2:4544580 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy2g0527 | K05280 | - | csv:101207160 | 787.719 |