Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0528 ATGGACGAAATTTCCCTCATCGTCGCCGCAGCCGCCGTAACCCTCGCCTCCGCCGTCCTCCTCCACCGCTTCTTATTCCTCCGCCGCAGCTCTCAATCTCTCCGCCTCCCGCCCGGCCCGAAACCATGGCCGATCGTCGGAAACTTGCCGCAAATCGGCGGAGCGCCTCTCCACTCACACCTCGCGGCCATGGCCGGTGAGTACGGACCTCTGATGTACCTCCGATTCGGCTCCGTCGACGTCGTCGTGGCGGCATCTGCGGCGGTGGCGGAGCAATTCTTGAAGATTCGCGACGTTAACTTCCTTAGCCGGCCGCCGAACGCCGGCGCTAAATATATTGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGCCCGCGGTGGCGGTTGCTCCGGAAGATCAGCGCCGTCCATCTGTTCTCGTCAAAAGCCCTAGATGATCATCGACGTGTACGCGAGGAGGAAGTAGCGGTGCTAGTACAGACCCTTGCAAGCGCCGGCAAAGCACCGGCGACCTTGGGGAGCTTGCTCACAATATGCACAGCGAATGCCCTTGGACGGACGATGATTGGACGACGTGTGTTCGGTGATGGAAGCGACGGTGGCGATCCGAAGGTGGACCAGTTTAAGGCAATTGTGGAGCAAGTAATGGTGCTGTCGGGAAAGTTCAACCCCGGTGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGCGTGGCCGGTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTCTTGACCAAGATCCTCGACGAGCACCGGAATTTATTGGCCGGCGCCGGCGGCAGCCAACATCAAGACTTGCTGAGCATGCTTCTTTCCTCAAAGGATCAAGCTGAAGATGAGAATGAGAAGCTCAGTGACACTGAGATCAAGGCCTTGTTGTTGGTATTATTTCTCGAACAAAACTTGGCTGCATATTGGTATTATGATTTCCCTACTTATCCTATTAAAATCTTGGCAACTAAGAGGTGTGGAGAAAATAACATGTTTACAGCTGGAACCGACACGTCAGCAAGCACAGTAGAGTGGGCCCTAGCAGAGCTGATCAGGCACCCGAAAATGCTGGCCCAGACCCAACAAGAACTGGACTCCGTAGTGGGCCGCGATCGGTTAGTTTCCGATTTGGACCTTCCACGACTGGGCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTTCCACATCCCTAAAGGCTCCACTCTCTTGGTCGACGTATGGGCCATCGGTCGCGACCCAAAGGAATGGGCCGACCCACTTGAGTTCAGGCCCAATAGGTTCCTCCCTGGCGGCGAGAAGGCCCACGTCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTCGGGGCTGGGCGGAGGATTTGCGTGGGGATGAGTTTGGGCCTGAGGACGGTTCAAATGCTAACTGCCACGTTGGTCCATTCCTTTGATTGGGCCTTGCCTATTGGGCTTTCGCCTGATAAGTTGAACATGGACGAGGCCTTTGGGCTCACTCTGCGTCGGGCCCAACCCTTGGCTCTGCATCCACGGCCCAGGTTATCGCCTGAGGTTTATCAAGGATTGCCTTCTATTGGTGATAGTCATCCAGATACTTTCTTTTGGCACTATGACAAAACAGGAAAGTATACAGTCTGGAGCGGATATAAACTTGCAACAGACAAGTGTAATGAGGCGTCTTCATCAGAGGAGTCCTATTGCAGCTCTTGGTGGAAGACATTATGGAGACTAAACATCCCAAACAAGCTAAAGATCTCTGCATGGAGAGCCAGTCTGAATATCCTCCCAACAAACATGAATCTCGTCATTCGTAGGGTCCATAATGATCCCCGTTGCCCAAAGTGTGGAAAAGCAAATGAAACAACTATTCATGCTCTGTGGGCCTGCAATAAGGTAAAAAAGCACTGGGCTCGATGGAGCCCAGTGCAATATCTTCTCAATACCCCTTATGATGATCCTCTTGATCTGTTTTGTAGGTTCCAGGAGCAATCATGCTCTAGTGACATGGCAATCTTTGTTGCAACTCTATGTTACATTTCAGAATTCGTGGAGGCACAAACAAAGCGTCGTGGAGACCAGGAACGACCAGGAGATACTGTTGATTCCCACACAAAAGATTGGGTACCACCGGCCCACAGCCATTACAAGTTAAATGTGAATGCGTCACTAGCAAACGGGGAGATGGGGTCGGGCATGATTATCAGAAACTCAAAGGGAGAAGCGATGGCAGTTGCAGAAAAGTTCAGGAGAACGAGTTGCAGTGTGGAATGGGCAGAAGCTCAGGCGTTGGTAGATGGAGTGCATCTAGCTATGGACTCGGGCTTAACACCCGTTTGGGCAGAGATGGATTCCAAAATTGTTTGGAATTTACTTCATGATCGAGATCAATATATCAATGAGCTAGCTCCATTAATTCACCATCTCAGACTTTTGGCCACAGCTCAACACATCAGGGGTTTCCTTCTAACCCCAAGGGAAGGCAATCAAGTAGCTCGCCAGTTAGCTACCCATGCTCGCACAACATAA 2616 52.14 MDEISLIVAAAAVTLASAVLLHRFLFLRRSSQSLRLPPGPKPWPIVGNLPQIGGAPLHSHLAAMAGEYGPLMYLRFGSVDVVVAASAAVAEQFLKIRDVNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRVREEEVAVLVQTLASAGKAPATLGSLLTICTANALGRTMIGRRVFGDGSDGGDPKVDQFKAIVEQVMVLSGKFNPGDFFPSLEWLDLLGVAGEMKKVHKWFDDFLTKILDEHRNLLAGAGGSQHQDLLSMLLSSKDQAEDENEKLSDTEIKALLLVLFLEQNLAAYWYYDFPTYPIKILATKRCGENNMFTAGTDTSASTVEWALAELIRHPKMLAQTQQELDSVVGRDRLVSDLDLPRLGYLQAVVKETFRLHPPTPLSLPRMAAESCEINGFHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMSLGLRTVQMLTATLVHSFDWALPIGLSPDKLNMDEAFGLTLRRAQPLALHPRPRLSPEVYQGLPSIGDSHPDTFFWHYDKTGKYTVWSGYKLATDKCNEASSSEESYCSSWWKTLWRLNIPNKLKISAWRASLNILPTNMNLVIRRVHNDPRCPKCGKANETTIHALWACNKVKKHWARWSPVQYLLNTPYDDPLDLFCRFQEQSCSSDMAIFVATLCYISEFVEAQTKRRGDQERPGDTVDSHTKDWVPPAHSHYKLNVNASLANGEMGSGMIIRNSKGEAMAVAEKFRRTSCSVEWAEAQALVDGVHLAMDSGLTPVWAEMDSKIVWNLLHDRDQYINELAPLIHHLRLLATAQHIRGFLLTPREGNQVARQLATHARTT 871
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 4544580 4550786 - Maker00021976 Lcy2g0528 625293
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0528 871 Coils Coil 279 299 - -
Lcy2g0528 871 CDD RNase_H_like 747 865 IPR044730 -
Lcy2g0528 871 PANTHER CYTOCHROME P450 98A9 5 550 - -
Lcy2g0528 871 FunFam Putative cytochrome P450 superfamily protein 332 541 - -
Lcy2g0528 871 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS P450 superfamily signature 343 360 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 Gene3D Cytochrome P450 29 547 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 395 413 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 352 378 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 436 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 332 349 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy2g0528 871 Pfam zinc-binding in reverse transcriptase 573 666 IPR026960 -
Lcy2g0528 871 Gene3D - 745 869 IPR036397 GO:0003676(InterPro)
Lcy2g0528 871 Pfam Reverse transcriptase-like 755 868 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy2g0528 871 SUPERFAMILY Cytochrome P450 34 543 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 Pfam Cytochrome P450 339 527 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy2g0528 871 Pfam Cytochrome P450 37 310 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0528 Lcy-Chr2:4544580 Lcy3g1720 Lcy-Chr3:44492607 7.18E-168 dispersed
Lcy4g0320 Lcy-Chr4:4030892 Lcy2g0528 Lcy-Chr2:4544580 4.22E-57 dispersed
Lcy7g0861 Lcy-Chr7:8555127 Lcy2g0528 Lcy-Chr2:4544580 5.93E-20 dispersed
Lcy7g1058 Lcy-Chr7:11249256 Lcy2g0528 Lcy-Chr2:4544580 2.69E-47 dispersed
Lcy2g0527 Lcy-Chr2:4539889 Lcy2g0528 Lcy-Chr2:4544580 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0528 K05280 - csv:101207160 793.112