Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0528 | ATGGACGAAATTTCCCTCATCGTCGCCGCAGCCGCCGTAACCCTCGCCTCCGCCGTCCTCCTCCACCGCTTCTTATTCCTCCGCCGCAGCTCTCAATCTCTCCGCCTCCCGCCCGGCCCGAAACCATGGCCGATCGTCGGAAACTTGCCGCAAATCGGCGGAGCGCCTCTCCACTCACACCTCGCGGCCATGGCCGGTGAGTACGGACCTCTGATGTACCTCCGATTCGGCTCCGTCGACGTCGTCGTGGCGGCATCTGCGGCGGTGGCGGAGCAATTCTTGAAGATTCGCGACGTTAACTTCCTTAGCCGGCCGCCGAACGCCGGCGCTAAATATATTGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGCCCGCGGTGGCGGTTGCTCCGGAAGATCAGCGCCGTCCATCTGTTCTCGTCAAAAGCCCTAGATGATCATCGACGTGTACGCGAGGAGGAAGTAGCGGTGCTAGTACAGACCCTTGCAAGCGCCGGCAAAGCACCGGCGACCTTGGGGAGCTTGCTCACAATATGCACAGCGAATGCCCTTGGACGGACGATGATTGGACGACGTGTGTTCGGTGATGGAAGCGACGGTGGCGATCCGAAGGTGGACCAGTTTAAGGCAATTGTGGAGCAAGTAATGGTGCTGTCGGGAAAGTTCAACCCCGGTGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGCGTGGCCGGTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTCTTGACCAAGATCCTCGACGAGCACCGGAATTTATTGGCCGGCGCCGGCGGCAGCCAACATCAAGACTTGCTGAGCATGCTTCTTTCCTCAAAGGATCAAGCTGAAGATGAGAATGAGAAGCTCAGTGACACTGAGATCAAGGCCTTGTTGTTGGTATTATTTCTCGAACAAAACTTGGCTGCATATTGGTATTATGATTTCCCTACTTATCCTATTAAAATCTTGGCAACTAAGAGGTGTGGAGAAAATAACATGTTTACAGCTGGAACCGACACGTCAGCAAGCACAGTAGAGTGGGCCCTAGCAGAGCTGATCAGGCACCCGAAAATGCTGGCCCAGACCCAACAAGAACTGGACTCCGTAGTGGGCCGCGATCGGTTAGTTTCCGATTTGGACCTTCCACGACTGGGCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTTCCACATCCCTAAAGGCTCCACTCTCTTGGTCGACGTATGGGCCATCGGTCGCGACCCAAAGGAATGGGCCGACCCACTTGAGTTCAGGCCCAATAGGTTCCTCCCTGGCGGCGAGAAGGCCCACGTCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTCGGGGCTGGGCGGAGGATTTGCGTGGGGATGAGTTTGGGCCTGAGGACGGTTCAAATGCTAACTGCCACGTTGGTCCATTCCTTTGATTGGGCCTTGCCTATTGGGCTTTCGCCTGATAAGTTGAACATGGACGAGGCCTTTGGGCTCACTCTGCGTCGGGCCCAACCCTTGGCTCTGCATCCACGGCCCAGGTTATCGCCTGAGGTTTATCAAGGATTGCCTTCTATTGGTGATAGTCATCCAGATACTTTCTTTTGGCACTATGACAAAACAGGAAAGTATACAGTCTGGAGCGGATATAAACTTGCAACAGACAAGTGTAATGAGGCGTCTTCATCAGAGGAGTCCTATTGCAGCTCTTGGTGGAAGACATTATGGAGACTAAACATCCCAAACAAGCTAAAGATCTCTGCATGGAGAGCCAGTCTGAATATCCTCCCAACAAACATGAATCTCGTCATTCGTAGGGTCCATAATGATCCCCGTTGCCCAAAGTGTGGAAAAGCAAATGAAACAACTATTCATGCTCTGTGGGCCTGCAATAAGGTAAAAAAGCACTGGGCTCGATGGAGCCCAGTGCAATATCTTCTCAATACCCCTTATGATGATCCTCTTGATCTGTTTTGTAGGTTCCAGGAGCAATCATGCTCTAGTGACATGGCAATCTTTGTTGCAACTCTATGTTACATTTCAGAATTCGTGGAGGCACAAACAAAGCGTCGTGGAGACCAGGAACGACCAGGAGATACTGTTGATTCCCACACAAAAGATTGGGTACCACCGGCCCACAGCCATTACAAGTTAAATGTGAATGCGTCACTAGCAAACGGGGAGATGGGGTCGGGCATGATTATCAGAAACTCAAAGGGAGAAGCGATGGCAGTTGCAGAAAAGTTCAGGAGAACGAGTTGCAGTGTGGAATGGGCAGAAGCTCAGGCGTTGGTAGATGGAGTGCATCTAGCTATGGACTCGGGCTTAACACCCGTTTGGGCAGAGATGGATTCCAAAATTGTTTGGAATTTACTTCATGATCGAGATCAATATATCAATGAGCTAGCTCCATTAATTCACCATCTCAGACTTTTGGCCACAGCTCAACACATCAGGGGTTTCCTTCTAACCCCAAGGGAAGGCAATCAAGTAGCTCGCCAGTTAGCTACCCATGCTCGCACAACATAA | 2616 | 52.14 | MDEISLIVAAAAVTLASAVLLHRFLFLRRSSQSLRLPPGPKPWPIVGNLPQIGGAPLHSHLAAMAGEYGPLMYLRFGSVDVVVAASAAVAEQFLKIRDVNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRVREEEVAVLVQTLASAGKAPATLGSLLTICTANALGRTMIGRRVFGDGSDGGDPKVDQFKAIVEQVMVLSGKFNPGDFFPSLEWLDLLGVAGEMKKVHKWFDDFLTKILDEHRNLLAGAGGSQHQDLLSMLLSSKDQAEDENEKLSDTEIKALLLVLFLEQNLAAYWYYDFPTYPIKILATKRCGENNMFTAGTDTSASTVEWALAELIRHPKMLAQTQQELDSVVGRDRLVSDLDLPRLGYLQAVVKETFRLHPPTPLSLPRMAAESCEINGFHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMSLGLRTVQMLTATLVHSFDWALPIGLSPDKLNMDEAFGLTLRRAQPLALHPRPRLSPEVYQGLPSIGDSHPDTFFWHYDKTGKYTVWSGYKLATDKCNEASSSEESYCSSWWKTLWRLNIPNKLKISAWRASLNILPTNMNLVIRRVHNDPRCPKCGKANETTIHALWACNKVKKHWARWSPVQYLLNTPYDDPLDLFCRFQEQSCSSDMAIFVATLCYISEFVEAQTKRRGDQERPGDTVDSHTKDWVPPAHSHYKLNVNASLANGEMGSGMIIRNSKGEAMAVAEKFRRTSCSVEWAEAQALVDGVHLAMDSGLTPVWAEMDSKIVWNLLHDRDQYINELAPLIHHLRLLATAQHIRGFLLTPREGNQVARQLATHARTT | 871 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4544580 | 4550786 | - | Maker00021976 | Lcy2g0528 | 625293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0528 | 871 | Coils | Coil | 279 | 299 | - | - | |
| Lcy2g0528 | 871 | CDD | RNase_H_like | 747 | 865 | IPR044730 | - | |
| Lcy2g0528 | 871 | PANTHER | CYTOCHROME P450 98A9 | 5 | 550 | - | - | |
| Lcy2g0528 | 871 | FunFam | Putative cytochrome P450 superfamily protein | 332 | 541 | - | - | |
| Lcy2g0528 | 871 | PRINTS | P450 superfamily signature | 477 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | P450 superfamily signature | 396 | 407 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | P450 superfamily signature | 486 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | P450 superfamily signature | 343 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | Gene3D | Cytochrome P450 | 29 | 547 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 395 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 352 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 436 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 476 | 486 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 332 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | PRINTS | E-class P450 group I signature | 486 | 509 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 479 | 488 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy2g0528 | 871 | Pfam | zinc-binding in reverse transcriptase | 573 | 666 | IPR026960 | - | |
| Lcy2g0528 | 871 | Gene3D | - | 745 | 869 | IPR036397 | GO:0003676(InterPro) | |
| Lcy2g0528 | 871 | Pfam | Reverse transcriptase-like | 755 | 868 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) | |
| Lcy2g0528 | 871 | SUPERFAMILY | Cytochrome P450 | 34 | 543 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | Pfam | Cytochrome P450 | 339 | 527 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0528 | 871 | Pfam | Cytochrome P450 | 37 | 310 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0528 | Lcy-Chr2:4544580 | Lcy3g1720 | Lcy-Chr3:44492607 | 7.18E-168 | dispersed | |
| Lcy4g0320 | Lcy-Chr4:4030892 | Lcy2g0528 | Lcy-Chr2:4544580 | 4.22E-57 | dispersed | |
| Lcy7g0861 | Lcy-Chr7:8555127 | Lcy2g0528 | Lcy-Chr2:4544580 | 5.93E-20 | dispersed | |
| Lcy7g1058 | Lcy-Chr7:11249256 | Lcy2g0528 | Lcy-Chr2:4544580 | 2.69E-47 | dispersed | |
| Lcy2g0527 | Lcy-Chr2:4539889 | Lcy2g0528 | Lcy-Chr2:4544580 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy2g0528 | K05280 | - | csv:101207160 | 793.112 |