Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0552 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTTGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTGGATGGCATTGTAGCACAGTTACAGAGCCACTTTCCTGATGCTTCTTTCATGGTTTTCAACTTCAGAGAAGGTGGTAGGCGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTATTGCCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCGCTGGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGACATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTTCTTTAAACCCTCAGCCTTCCCAGCTGAGATATCTTCAACACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCAGACACACCTCTAGTTTTGGATTGTTTAATACTTAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTGCGTGTTTATGGTCAAGACCCCTCTACACCGGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAGAGAAAACATATCCGCAACTACCTACAGGCAGAGTGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGTGTCCATTTGGATGAAGATCTGGTACGTGAGGAGATGATGTTTAGAGTTATGTTTCACACTGCATTTGTTAGATCAAACATTATGGTGCTGACCCGCGATGAAGTTGATGTCTTATGGGATGCGAGGGACCAGTTTCCTAAGGACTTCAAAGTTGAGGCACTCTTTTTGGATGCTGATGCTGATGCTGTTGGCTCCAATCTCACCACAGCCTTCGATGATGAAGATGCAAATGAAACTGGAGCTGCTTCTCCTGAAGAATTTTATGAGGTTGAAGAGATCTTCAGTAATGCAATGGATGGGCAGGAAGCAAAGGGGTCCAATGATCCTCAGGTGGTCAATCATGTAGACCGTAAAGAAGATTGGAAGGAGGACTTGGATCCTCCTGCATTTCAAGATTGTGCATCTGACGATGGAAATCTTAAGCATGATAAGAAATCAAATTTTGATGCAGTGAAGGACATTACAGTGGATGACGTGAAGTATAAACTGGATGAAAAAATATATTCTGATCTTAATGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCGAATTCCTTCTTGGTTGATGCTAATGTCCTGACTCATGTGAAAGCCCAGGGATTGGTAGATGATGCATACGAGAAATTTGAAGATACGGAAGAAAAGGATGATGGAAGAGATACTGCACCAGAGAAATTGGAGAACAAGGTTTTGCAGAAAAAGTTGAGTGCTGATGGTTCTAGACAAAAATTTGAAAAATTGCAAGCACCAATCCCTAAGAAACAGCCTATTTCAAGTGGAAAGCCGACCCTTGATATGGGTTTAGCCAAACAGAAAGTCAAACCGCAAGAGAATCAAGGTTTTTCTCCAAAACAAGCAAAGCCGAATGCAGTTTCTAGGTGGATCCCTCCTAACAAAGGCTCTTATACGAATTCTATGCACGTTTCTTATCCACCTTCAAGATATAACAGTGCCCCAGCTGCTTTGGCAAGTATTGCACCATCGAAGGATACAAATGCAAATTCCAAAACAAAGGCTGCTGCCACCCTTTCTTCTCTGGTTGCTACAGATGTTTTTAATGAACGAAAAAATTATAAAGTGGATTCTGTAAGGTCTTCATACTCTGCACCTGGGGAACTCATGATTGGCCCACCATCTCCCGTTCAGTCAATTGAGGAGGGATATTCTTCCTCTGAAACTTTAAAACCACCGCATAGTGATCCACAGCTTGAAGTACCACCTCCCCCCCTGCCCACAAAGCCTCCATCTCCACATCTACCATCACCCCCCGGGGCAAATGCAATACCTCCTCCACCTCCTCCACCACCCCCTTCATTTCATCATACGGATTCAACATACTCTGCTCCACCACTTTCTGTGTCTGCAGCACCACCACCCACAGTTAACTCATCAAAGGCAGTGACTCCCCCTCCCCCTCCCCCTCCCCCTCCAGTCAGTAGGCAGAATAGCGAGAGGCTTTTGCCCCATTCTTCTACACAACCATCATGGGAGCAAATATATTCTTCTGTTTCTACTGTAATGGTGGCTGGTTCTATACCTCCTCCACCACCCCCACCTCCACCTCCCTCTGGCCGGCCATCTACATTAAAGAATATGGGAAGTACACCTCCCGTACCTGTTTTTTCTCCTCCTTCAGCCCTTCTTGCCTTGTCACATAAAGGTATATCACTAGCACCACCCCCACGCCCACTTCCCCCATCATCTGTGATGCATGAAGCACTTGTTCCACCACCTCCGCCACCCCTGCCTACTTCAATATATGGTGGTAGAGCTCCACCACCCCCACCCTCACCCCCATCCCCATTAGTGCATGGGGCATTTCCTTCACCATCTTTAGTGAAAGGAGCACCACCTCCGCCGCCTCCGCCTCCGCCTCCGCCCATTCAATCTCCAACACCATCTTTATTACATGGAGCACCACCCCCACCCCCTCCACCACCTTCAAAGCATGGAGCCCCACCTCCACCACCTTCGCCACTTCCCCCATCTTTGCATGTCCCACCTCCACCACCTCCACCACCTCCCATGTATGGAACACCCCCTCCTCCACCCCCTCCGATGTATGGTACACCATCTCCTTCAATCCATTCAATGCAGGGGGTACCCCCTCCACCTCCTCCACCCCCTCCAATGCCTAGTGCATCCTCTCCTTTGATACATGGGGGGTCACCACCTCCTCCACCCCCTCCAATGCATGGGGCTTCTCCACCTCCGCCACCTCCGCCACCTCCACCACCTCCACCAATGCATGGGTCTACTCCTCCACCGCCGCCACCACCAATGTATGGGGCTCCACCACCACCACCACCACCACCACCAATGTATGGGGCTCCACCACCACCACCACCACCACCTTCTTTGTATGGGGCTCCTCCGCCACCACCACCTCCATTGCGTGGGGTTCCTCCACCACCGCCACCTCCACCAATGCATGGGGCTCCTCCACCGCCACCTCCACCAATGCGTGGGGCTCCTCCACCACCGCCACCTCCGCCAATGCATGGGGCTCCTCCACCACCGCCACCTCCGCCGATGCATGGGGCTCCTCCTCCACCGCCACCTCCGCCAATGCATGGGGCTCCCCCACTGCCACCTCCACCCATGCATGGGGCTCCTCCCCCACCGCCACCTCCAGCAATGCATGGAGCTCCTCCTCCACCACCACCACCGTTTTTGGGAGCCCCCCCACCACCTCCCCCACCCGGGGGTGGTGGAGCCCCTCCACCACCTCCCCCACCCGGGGGTGGTAGAGGCCCACCACCGCCTCCCCCACCTGGGGGTGGTAGAGCGCCACCCCCACCTCCCCCACCTGGGGGTGGTGGAGCCCCGGCACCCCCTCCTCCTCCTGGAGGTCGTGTTCCCGCCCCTCCTGGAGGTCCAGGTGGTGGACCTCCTCCACCTCCACCACTAGGTGCAAAAGGAGCAAACGCTGCACCTGATCCAAGAGGTTTGTCTGCTGGAAGAGGACGTGGGCTATCACGCTCAAGTGCTACAGCACCTCGAAGGTCCTCCTTGAAGCCTCTACATTGGAGCAAAGTAACGAGGGCTCTACAAGGGAGCTTGTGGGAAGAGCTGCAGAGATATGGAGAGCCTCAAATTGCACCAGAGTTTGATGTGTCCGAGATAGAGACTCTTTTTTCTGCAACTGTTCCCAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCTGTTGGATCCAAAACTGACAAAGTTCACCTGATTGACCTCAGGAGAGCGAATAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTAGCAATGGACGAGTCAGTATTAGATGTTGATCAGGTGGAAAATCTCATAAAGTTCTGTCCTACAAAGGAGGAGATGGAACTTCTTAAGGGATACACCGGTGACAAGGATAGCCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCGAAGATGAGAGTGTTCTCTTTTAAGATTCAGTTCGGCTCTCAGATATCAGAATTTAAGAAGAGCTTAAATACTGTTAACTCCGCATGTGATGAGGTGAGGAATTCTGCTAAACTGAAGGACATTATGAAGAAAATTCTTTATTTGGGGAATACACTGAATCAAGGAACAGCGAGGGGTTCTGCCGTTGGCTTCAAGTTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTAATGCATTATCTTTGCAAGGTCCTCGCTTCGAAGACACCCGCTCTTCTTAATTTTCATTTGGACCTGGGTAGCTTAGAGGCAGCAACCAAGATTCAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAAGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAATTTTTCGCAAGACGCTGAAAGAATTCATTGCTAGTGCTGAGACAGAGGTGGGATCAGTGACAAATCTATACTCTGTTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGTGAGGACCCGGCTCGTTGTCCATTTGAGCAGGTTACAGTGACATTATTGAACTTTGTGAGATTGTTTCGGAAAGCACATGAAGAGAACTGCAAACAGGCTGAATTGGAAAAGAAAAAAGCTGATAAGGACGCTGAAATGGAGAATGCCAAAGGAATTAGCCTTACGAAGAAGAGTGTGAAATAG 5070 49.11 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGGRRSQISDVLTQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLDMVYKQAPKELLHLLSSLNPQPSQLRYLQHISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRVYGQDPSTPANRTSKLLFSTSIKRKHIRNYLQAECMLVKIDIHCHVQGDVVLECVHLDEDLVREEMMFRVMFHTAFVRSNIMVLTRDEVDVLWDARDQFPKDFKVEALFLDADADAVGSNLTTAFDDEDANETGAASPEEFYEVEEIFSNAMDGQEAKGSNDPQVVNHVDRKEDWKEDLDPPAFQDCASDDGNLKHDKKSNFDAVKDITVDDVKYKLDEKIYSDLNAVKDIAVDDGDMNSNSFLVDANVLTHVKAQGLVDDAYEKFEDTEEKDDGRDTAPEKLENKVLQKKLSADGSRQKFEKLQAPIPKKQPISSGKPTLDMGLAKQKVKPQENQGFSPKQAKPNAVSRWIPPNKGSYTNSMHVSYPPSRYNSAPAALASIAPSKDTNANSKTKAAATLSSLVATDVFNERKNYKVDSVRSSYSAPGELMIGPPSPVQSIEEGYSSSETLKPPHSDPQLEVPPPPLPTKPPSPHLPSPPGANAIPPPPPPPPPSFHHTDSTYSAPPLSVSAAPPPTVNSSKAVTPPPPPPPPPVSRQNSERLLPHSSTQPSWEQIYSSVSTVMVAGSIPPPPPPPPPPSGRPSTLKNMGSTPPVPVFSPPSALLALSHKGISLAPPPRPLPPSSVMHEALVPPPPPPLPTSIYGGRAPPPPPSPPSPLVHGAFPSPSLVKGAPPPPPPPPPPPIQSPTPSLLHGAPPPPPPPPSKHGAPPPPPSPLPPSLHVPPPPPPPPPMYGTPPPPPPPMYGTPSPSIHSMQGVPPPPPPPPPMPSASSPLIHGGSPPPPPPPMHGASPPPPPPPPPPPPPMHGSTPPPPPPPMYGAPPPPPPPPPMYGAPPPPPPPPSLYGAPPPPPPPLRGVPPPPPPPPMHGAPPPPPPPMRGAPPPPPPPPMHGAPPPPPPPPMHGAPPPPPPPPMHGAPPLPPPPMHGAPPPPPPPAMHGAPPPPPPPFLGAPPPPPPPGGGGAPPPPPPPGGGRGPPPPPPPGGGRAPPPPPPPGGGGAPAPPPPPGGRVPAPPGGPGGGPPPPPPLGAKGANAAPDPRGLSAGRGRGLSRSSATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSEIETLFSATVPKPADKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDSLGKCEQYFLELMKVPRVESKMRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSAKLKDIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEAATKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSEIFRKTLKEFIASAETEVGSVTNLYSVVGRNADALALYFGEDPARCPFEQVTVTLLNFVRLFRKAHEENCKQAELEKKKADKDAEMENAKGISLTKKSVK 1689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4730283 4746842 + Maker00021881 Lcy2g0552 625317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0552 1689 PANTHER FORMIN-J 1179 1676 IPR051144 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 842 889 - -
Lcy2g0552 1689 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 634 1289 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 558 590 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 684 724 - -
Lcy2g0552 1689 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 767 792 - -
Lcy2g0552 1689 Gene3D - 205 336 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 747 765 - -
Lcy2g0552 1689 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lcy2g0552 1689 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1279 1677 IPR015425 -
Lcy2g0552 1689 FunFam Formin-like protein 1279 1663 - -
Lcy2g0552 1689 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1353 1678 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 667 681 - -
Lcy2g0552 1689 SMART PTEN_C2_2 198 338 IPR014020 -
Lcy2g0552 1689 Pfam Formin Homology 2 Domain 1284 1651 IPR015425 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 794 810 - -
Lcy2g0552 1689 Coils Coil 1652 1681 - -
Lcy2g0552 1689 Gene3D Formin, FH2 domain 1277 1663 IPR042201 -
Lcy2g0552 1689 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 1664 1679 - -
Lcy2g0552 1689 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 186 IPR029021 -
Lcy2g0552 1689 Coils Coil 1558 1582 - -
Lcy2g0552 1689 SMART it6_source 686 1687 IPR015425 -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 725 746 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 1664 1689 - -
Lcy2g0552 1689 MobiDBLite consensus disorder prediction 896 1258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0552 Lcy-Chr2:4730283 Lcy9g1889 Lcy-Chr9:43958041 7.38E-275 dispersed
Lcy2g0552 Lcy-Chr2:4730283 Lcy5g2518 Lcy-Chr5:47956296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0552 K28090 - csv:101215105 1255.35