Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0554 ATGGGGGGAGAATTTTCTAGGGCTCCAATCCCTCGAATCCCCTTCTCCTCCCTTTTCCTCCTCCTCTCCCTCTTCCTCTCCATCTCTCTTTCCTCTGCTAAAAACCCCTCCTTCCTTCCCTTTTCCCCTCGCGAACATTACTTGATCGACTGCGGCTCCCCGGACCAAACCCGTCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCGACCTCTCTCCTTTCCACCGAAGAAGATGTTCAAATCTCTGTCGATTCCGTCCCCGAAAACGCCACCGTCTCGCCTCTTTCCTCTTGGGCATTGCCTCTCTTCCGCACCGCCAGGATTTTCCTCGGCGATTCCACTTACACTTTCTTCATTTCTCAGGCCGGCCGCCATTGGATTCGCCTCTACTTTTACCCTCTTCCTCACCCTAATTACAATCTCTCCGATTCCGTTTTCACTGTCACGACGGACAGTTTCGTCCTCCTTCACGATTTCTCGGTCAATGGCAATTCCAAAATCGCCTTCAAGGAGTATCTGATCAACATAACCACCGATCGATTCTCTCTTCAATTCAAACCCAAGAAGAATTCGTTTGCGTTCGTCAATGCCATCGAACTTGTTTCCGCCCCAGATACTCTGTTTTCCGATTCGGCAACCTCTGTTTCTCCCGTGGGGTTTTTTAACGGATTGTCGAATTACGCTCTGCAAATTTGCTACCGAGTTAACGTGGGAGGGCCTGAGCTCGTTCCTCAAAACGATACGCTGTCAAGAACATGGGAAACCGATGATGCTTATAACAAATTTCCTCAGGGTTCTAAGAATGTTTCTGTGGCTCTGGACTCCATTAAATTCCCTGAAAATGAAGTGACTCCATTGACTGCTCCGAATTGGGTTTATGCAACTGCGGAGGATCTGCAAGATCCTCAAACAATGCAAGTGAACTTTAATCTGACTTGGAGTTTCAATGTGGAGCAGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCAAAGTCCTCAACAGTTTGTACTTCAATGTTTACATAAATGGGATGGTGGGTATTGCAGATCTTGATCTCTCTCAGCTCACTGGCGATCTTTCCACTCCTTACTATAGAGACCTCGTGCTCAATGCCTCCGACGTCAAAAACAACTCCATCATGATTCAGGTGGGTCCATCTAATGTGGGTTCAGGGCTTCAAGAAGCGATCCTGAATGGGGTGGAGATCATGAAGATGAGCAACGATGCACAGAGCTTGGATGGATTGTTTTCAGTGGATGGAACATACATGGGAGGCCCAAGATTCGGCACCATGAAAATTGTTGCCATTGTGGGTTTGGCAATGGGAGTGGTGGCGGTTCTGTTTCTTGCAGTTGTGTTCTTGAGATGGCAGAGAAGGCCTCAGGGATGGGAGAAGAGGAACAGTTTCTCTTCATGGCTTCTTCCATTGCATTCAACTCACTCCACTTTGTTCTCTAGCAAAAGCAGTTCCAGAAGATCGAGCGTTTTTGGTTCTCGCAGGGTTAGCAAGACTGGTTTTTCTGGCATCTACACCAATGTGGGTCTCGGTCGTTACTTCTCTCTCCATGAGTTACAGGTTGCTACGCAGAATTTCAACGAGAAAGCAGTGATCGGCGTTGGTGGGTTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACCAAAGTCGCCATTAAACGTGGAAACCCTAGCTCAGACCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTCTCGAAGCTCCGCCATCGCCATCTCGTTTCCCTAATCGGCTACTGCGACGAGCAATCCGAGATGATTCTGGTGTACGAGTACATGGCCAATGGCCCGTTTCGCGACCATTTATATGGCTCAAATCTCCCTCCATTGTCCTGGAAACAGAGGCTCGAAATCTGCATCGGCGCAGCCCGTGGGCTGCACTATCTTCACACTGGAGCATCTCAGGGCATAATCCATCGTGATGTGAAGACCACCAACATTCTTCTTGATGAGAAATTTGTGGCCAAGGTTGCGGATTTTGGGCTTTCCAAAGCTGGCCCATCTCTGGAACAGACCCATGTGAGCACTGCAGTTAAAGGGAGTTTTGGTTACCTTGATCCAGAGTACTTCAGAAGACAACAGTTGACTGACAAATCTGATGTTTACTCTTTTGGGGTTGTTCTTTTTGAGGTTCTATGCGCAAGACAAGTCATAAATCCGACATTGCCGCGAGAGCAGGTGAATTTGGCGGAATGGGCAATGAAAAGTTATAAGAAAGGAAAGTTAGAGAAGATAATCGATCCTCATATTAGCAGCTCAATTGTACAGGGGTCGCTGAAGAAATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGTGTTGATAGGCCAAGCATGGGAGATGTGCTATGGAACTTAGAATATGCTTTGCAGCTACAAGAGGCAGTGTCGGAGCTCGATGACCCTGAGGAAGACAGATGTGAGGGCTTTGTGGGTTTGGAGACACCAAAACACGATGAACCAAAAGGAGAAACGAGTGCTCCTGTAAGTGATAATACTTCTGAAGTCTCAGTCAGTGCTCCTCTGTTTTCGGATATTCGAAATTTTCAGGGAAGATGA 2625 47.5 MGGEFSRAPIPRIPFSSLFLLLSLFLSISLSSAKNPSFLPFSPREHYLIDCGSPDQTRLDDGRIFKSDRESTSLLSTEEDVQISVDSVPENATVSPLSSWALPLFRTARIFLGDSTYTFFISQAGRHWIRLYFYPLPHPNYNLSDSVFTVTTDSFVLLHDFSVNGNSKIAFKEYLINITTDRFSLQFKPKKNSFAFVNAIELVSAPDTLFSDSATSVSPVGFFNGLSNYALQICYRVNVGGPELVPQNDTLSRTWETDDAYNKFPQGSKNVSVALDSIKFPENEVTPLTAPNWVYATAEDLQDPQTMQVNFNLTWSFNVEQSYSYLIRLHFCDIVSKVLNSLYFNVYINGMVGIADLDLSQLTGDLSTPYYRDLVLNASDVKNNSIMIQVGPSNVGSGLQEAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGPRFGTMKIVAIVGLAMGVVAVLFLAVVFLRWQRRPQGWEKRNSFSSWLLPLHSTHSTLFSSKSSSRRSSVFGSRRVSKTGFSGIYTNVGLGRYFSLHELQVATQNFNEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGASQGIIHRDVKTTNILLDEKFVAKVADFGLSKAGPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARQVINPTLPREQVNLAEWAMKSYKKGKLEKIIDPHISSSIVQGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELDDPEEDRCEGFVGLETPKHDEPKGETSAPVSDNTSEVSVSAPLFSDIRNFQGR 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4756934 4761894 - Maker00022012 Lcy2g0554 625319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0554 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0554 874 Gene3D Phosphorylase Kinase; domain 1 507 613 - -
Lcy2g0554 874 FunFam receptor-like protein kinase FERONIA 503 613 - -
Lcy2g0554 874 FunFam Receptor-like protein kinase FERONIA 614 827 - -
Lcy2g0554 874 Pfam Malectin-like domain 49 411 IPR024788 -
Lcy2g0554 874 SUPERFAMILY Protein kinase-like (PK-like) 514 809 IPR011009 -
Lcy2g0554 874 SMART serkin_6 538 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0554 874 ProSiteProfiles Protein kinase domain profile. 538 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0554 874 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524(InterPro)
Lcy2g0554 874 MobiDBLite consensus disorder prediction 823 860 - -
Lcy2g0554 874 Gene3D - 230 415 - -
Lcy2g0554 874 Gene3D - 45 206 - -
Lcy2g0554 874 Gene3D Transferase(Phosphotransferase) domain 1 614 829 - -
Lcy2g0554 874 Pfam Protein tyrosine and serine/threonine kinase 541 801 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0554 874 PANTHER OS07G0166700 PROTEIN 526 816 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lcy2g0554 874 FunFam Receptor-like protein kinase FERONIA 230 414 - -
Lcy2g0554 874 FunFam Putative receptor-like protein kinase 46 206 - -
Lcy2g0554 874 CDD STKc_IRAK 544 809 - -
Lcy2g0554 874 MobiDBLite consensus disorder prediction 828 847 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0590 Lcy-Chr1:5030660 Lcy2g0554 Lcy-Chr2:4756934 5.04E-69 dispersed
Lcy2g0554 Lcy-Chr2:4756934 Lcy9g1271 Lcy-Chr9:37310086 1.35E-287 dispersed
Lcy2g0554 Lcy-Chr2:4756934 Lcy3g2089 Lcy-Chr3:47850450 2.46e-313 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65718 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0554 - - - 0.0