Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0567 ATGGCGTTTCTTGGACTTTTCTTGGTGGGTTTCGTTCTCTCTTCGGGATGTTACTCGGTCCATGGCAACAATGGAGGTTGGAATGAAGCCCACGCCACGTTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCTTTAAGCACAGCCCTATTCAACAATGGACTGAGCTGCGGCGCTTGCTTTGAAATCAAGTGCGTAAACGACCCAAAATGGTGTCTTCCAAATTCCATCGTGGTCACTGCCACGAACTTCTGCCCACCAAACAATGCACTGCCCAACAACGCCGGAGGCTGGTGCAATCCTCCCCAGCACCATTTCGACCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCAATACAAAGCCGGCATTGTCCCAGTCGCTTACAGAAGGGTCTCATGTCAGAAGAAAGGAGGCATAAGATTCACAATCAACGGCCATTCGTACTTCAATTTAGTTCTTGTAACAAACGTCGGTGGAGCTGGGGATGTTCATGGGGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGCCAGAACTGGCAGAGCAATTCATATCTGAATGGACAGAGCCTGTCGTTCAAAGTGACGACCGGCGATGGCCGAACGGTGGTGGCCAACGACGTTGCGCCAGCTGGGTGGAGCTTTGGTCAGACATTTAGTGGGCTGCAGTTCCCATGA 753 53.39 MAFLGLFLVGFVLSSGCYSVHGNNGGWNEAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAQYKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVVANDVAPAGWSFGQTFSGLQFP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4877217 4878837 + Maker00022850 Lcy2g0567 625332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0567 250 Gene3D - 12 153 IPR036908 -
Lcy2g0567 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Lcy2g0567 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Lcy2g0567 250 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Lcy2g0567 250 Gene3D - 155 249 IPR036749 -
Lcy2g0567 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Lcy2g0567 250 CDD DPBB_EXPA_N 26 152 - -
Lcy2g0567 250 PANTHER EXPANSIN-A15 15 248 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 FunFam Expansin 17 153 - -
Lcy2g0567 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Lcy2g0567 250 SMART dpbb_1 62 147 IPR007112 -
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Lcy2g0567 250 FunFam Expansin 157 249 - -
Lcy2g0567 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Lcy2g0567 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Lcy2g0567 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0567 Lcy-Chr2:4877217 Lcy4g1224 Lcy-Chr4:27626994 5.29E-141 dispersed
Lcy6g1198 Lcy-Chr6:14070755 Lcy2g0567 Lcy-Chr2:4877217 2.93E-93 transposed
Lcy10g2014 Lcy-Chr10:44274019 Lcy2g0567 Lcy-Chr2:4877217 1.29E-143 wgd
Lcy2g0567 Lcy-Chr2:4877217 Lcy5g2536 Lcy-Chr5:48146177 7.16E-125 wgd
Lcy2g0567 Lcy-Chr2:4877217 Lcy7g0294 Lcy-Chr7:2530779 3.96E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0567 - - - 0.0