Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0568 ATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTATTCCGGCCATGCGCCGCCCGATCGAGATTCCTTTCTGGGTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCCGTGGCTGCCTCGTCGTCTTCATCTCTCAAGGTCGAAGCCAAGAAGGGAGAGTGGTTGCCCGGTCTGCCATCTCCGGCATACTTAAATGGAAGTCTTCCGGGCGACAACGGATTCGACCCACTGGGACTGGCGGAGGACCCAGAGAACTTGAGGTGGTTCGTGCAGGCGGAACTCGTCAACGGGCGGTGGGCGATGTTGGGCGTCGCCGGAATGCTTCTGCCGGAAGTTTTCACGAAGATCGGAATCATCAACGCCCCACAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCATCGTCTTCAACCCTGTTCGTGATCGAGTTCATCCTCTTCCATTACGTCGAAATCAGAAGATGGCAGGACATTAAAAACCCCGGCAGCGTGAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCTCCAAACGAAGTCGGCTACCCTGGTGGCATTTTCAATCCCCTGAATTTCGCCCCGACTCTTGAGGCCAAAGAGAAGGAAATCGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAATGTGACAGGGAAGGGGCCGTTCGACAACCTGTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTCCAGACGTTCGGTGGCAACTGA 759 54.94 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAASSSSSLKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4882718 4884860 + Maker00022517 Lcy2g0568 625333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0568 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lcy2g0568 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Lcy2g0568 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Lcy2g0568 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Lcy2g0568 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2071 Lcy-Chr13:39623077 Lcy2g0568 Lcy-Chr2:4882718 6.23E-68 dispersed
Lcy2g0568 Lcy-Chr2:4882718 Lcy2g0986 Lcy-Chr2:9184473 2.41E-67 dispersed
Lcy10g1770 Lcy-Chr10:42098067 Lcy2g0568 Lcy-Chr2:4882718 1.09E-47 transposed
Lcy9g0892 Lcy-Chr9:29874696 Lcy2g0568 Lcy-Chr2:4882718 9.69E-19 transposed
Lcy10g1345 Lcy-Chr10:36589985 Lcy2g0568 Lcy-Chr2:4882718 6.77E-26 transposed
Lcy2g0568 Lcy-Chr2:4882718 Lcy5g2537 Lcy-Chr5:48148995 8.66E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0568 K08910 - csv:101222701 487.263