Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0570 ATGCTGGAAATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCCGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCGAGTTCCGAGAAAGAAACACCAGATGGAGCAGTGCAAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGTTCTCTTACTGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTGGATGCAGTTGTCGGAAAAGTCACTGAGAGTTTAGCTGCAAGAGAAGAAACTCTTCATGACTCAGAGGATTCTGGATGTGTACAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAGTAGATGAAAACGATAAGCTCGAAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCTGCTCGAAAGAAAAATTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATACTGGACTGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAACGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGGCCACTGTCCTCAATCCTGCAGAAAGAAAGGTCTTGAATGGAACCAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATTAATGGTTTCCCTCCTCAAATCCAATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTTCTCCAAACACTGGTCCAAGTTCTCCTACACTAGGGAAGCATTCCAGAGATAGTGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGACCCGAATGAAGCCGCTAAGAGTTCAATATGGGAGACACTTGGTATCAAGAATGATTCGATCAAAGCGGTCGATCTGTCTAAAGTCTTCCAATCAAAGGGTGTTCAAAAGAATAACGTTTCTGAAGTGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCATGAGAGGTCGTGA 1479 44.02 MLEIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSEKETPDGAVQKVQFSQSRILCVLLLKPEFDLLVLANLDAVVGKVTESLAAREETLHDSEDSGCVQTANEAHMNPEVLSVDENDKLETSKTEKEQNDAPCSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPVCESMATVLNPAERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIQYLPGVPWPCSWNAPIPPPAFCPPGVPLSFYPATYWSCSVPGAWNIPWFTPQPCSPNTGPSSPTLGKHSRDSDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGVQKNNVSEVLSPVLQANPAALSRSLTFHERS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4891683 4894444 - Maker00022519 Lcy2g0570 625335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0570 492 MobiDBLite consensus disorder prediction 22 45 - -
Lcy2g0570 492 MobiDBLite consensus disorder prediction 392 410 - -
Lcy2g0570 492 ProSiteProfiles Zinc finger Dof-type profile. 147 201 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 MobiDBLite consensus disorder prediction 380 425 - -
Lcy2g0570 492 Pfam Dof domain, zinc finger 145 201 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 MobiDBLite consensus disorder prediction 112 138 - -
Lcy2g0570 492 ProSitePatterns Zinc finger Dof-type signature. 149 185 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0494 Lcy-Chr11:10988537 Lcy2g0570 Lcy-Chr2:4891683 5.14E-68 dispersed
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g1831 Lcy-Chr5:41135274 3.86E-33 dispersed
Lcy10g0543 Lcy-Chr10:14179367 Lcy2g0570 Lcy-Chr2:4891683 1.18E-115 transposed
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g2541 Lcy-Chr5:48173679 5.92E-143 wgd
Lcy2g0570 Lcy-Chr2:4891683 Lcy7g0290 Lcy-Chr7:2507911 3.41E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19713 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0570 - - - 0.0