Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0570 ATGCTGGAAATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCCGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCGAGTTCCGAGAAAGAAACACCAGATGGAGCAGTGCAAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGTTCTCTTACTGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTGGATGCAGTTGTCGGAAAAGTCACTGAGAGTTTAGCTGCAAGAGAAGAAACTCTTCATGACTCAGAGGATTCTGGATGTGTACAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAGTAGATGAAAACGATAAGCTCGAAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCTGCTCGAAAGAAAAATTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATACTGGACTGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAACGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGGCCACTGTCCTCAATCCTGCAGAAAGAAAGGTCTTGAATGGAACCAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATTAATGGTTTCCCTCCTCAAATCCAATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTTCTCCAAACACTGGTCCAAGTTCTCCTACACTAGGGAAGCATTCCAGAGATAGTGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGACCCGAATGAAGCCGCTAAGAGTTCAATATGGGAGACACTTGGTATCAAGAATGATTCGATCAAAGCGGTCGATCTGTCTAAAGTCTTCCAATCAAAGGGTGTTCAAAAGAATAACGTTTCTGAAGTGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCATGAGAGGTCGTGA 1479 44.02 MLEIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSEKETPDGAVQKVQFSQSRILCVLLLKPEFDLLVLANLDAVVGKVTESLAAREETLHDSEDSGCVQTANEAHMNPEVLSVDENDKLETSKTEKEQNDAPCSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPVCESMATVLNPAERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIQYLPGVPWPCSWNAPIPPPAFCPPGVPLSFYPATYWSCSVPGAWNIPWFTPQPCSPNTGPSSPTLGKHSRDSDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGVQKNNVSEVLSPVLQANPAALSRSLTFHERS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4891683 4894444 - Maker00022519 Lcy2g0570 625335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0570 492 MobiDBLite consensus disorder prediction 22 45 - -
Lcy2g0570 492 MobiDBLite consensus disorder prediction 392 410 - -
Lcy2g0570 492 ProSiteProfiles Zinc finger Dof-type profile. 147 201 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 MobiDBLite consensus disorder prediction 380 425 - -
Lcy2g0570 492 Pfam Dof domain, zinc finger 145 201 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 MobiDBLite consensus disorder prediction 112 138 - -
Lcy2g0570 492 ProSitePatterns Zinc finger Dof-type signature. 149 185 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0570 492 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0570 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0494 Lcy-Chr11:10988537 Lcy2g0570 Lcy-Chr2:4891683 5.14E-68 dispersed
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g1831 Lcy-Chr5:41135274 3.86E-33 dispersed
Lcy10g0543 Lcy-Chr10:14179367 Lcy2g0570 Lcy-Chr2:4891683 1.18E-115 transposed
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g2541 Lcy-Chr5:48173679 5.92E-143 wgd
Lcy2g0570 Lcy-Chr2:4891683 Lcy7g0290 Lcy-Chr7:2507911 3.41E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19713 None None None None Lcy TF