Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0570 | ATGCTGGAAATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCCGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCGAGTTCCGAGAAAGAAACACCAGATGGAGCAGTGCAAAAGGTACAGTTCAGTCAATCAAGAATTTTGTGTGTTCTCTTACTGAAACCTGAATTCGACCTGCTTGTTTTAGCGAATTTGGATGCAGTTGTCGGAAAAGTCACTGAGAGTTTAGCTGCAAGAGAAGAAACTCTTCATGACTCAGAGGATTCTGGATGTGTACAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAGTAGATGAAAACGATAAGCTCGAAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCTGCTCGAAAGAAAAATTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATACTGGACTGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAACGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGGCCACTGTCCTCAATCCTGCAGAAAGAAAGGTCTTGAATGGAACCAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGAGCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATTAATGGTTTCCCTCCTCAAATCCAATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTTCTCCAAACACTGGTCCAAGTTCTCCTACACTAGGGAAGCATTCCAGAGATAGTGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGACCCGAATGAAGCCGCTAAGAGTTCAATATGGGAGACACTTGGTATCAAGAATGATTCGATCAAAGCGGTCGATCTGTCTAAAGTCTTCCAATCAAAGGGTGTTCAAAAGAATAACGTTTCTGAAGTGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCATGAGAGGTCGTGA | 1479 | 44.02 | MLEIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSSEKETPDGAVQKVQFSQSRILCVLLLKPEFDLLVLANLDAVVGKVTESLAAREETLHDSEDSGCVQTANEAHMNPEVLSVDENDKLETSKTEKEQNDAPCSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPVCESMATVLNPAERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGARRCPQEPQMQNINGFPPQIQYLPGVPWPCSWNAPIPPPAFCPPGVPLSFYPATYWSCSVPGAWNIPWFTPQPCSPNTGPSSPTLGKHSRDSDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGVQKNNVSEVLSPVLQANPAALSRSLTFHERS | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4891683 | 4894444 | - | Maker00022519 | Lcy2g0570 | 625335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0570 | 492 | MobiDBLite | consensus disorder prediction | 22 | 45 | - | - | |
Lcy2g0570 | 492 | MobiDBLite | consensus disorder prediction | 392 | 410 | - | - | |
Lcy2g0570 | 492 | ProSiteProfiles | Zinc finger Dof-type profile. | 147 | 201 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy2g0570 | 492 | MobiDBLite | consensus disorder prediction | 380 | 425 | - | - | |
Lcy2g0570 | 492 | Pfam | Dof domain, zinc finger | 145 | 201 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy2g0570 | 492 | MobiDBLite | consensus disorder prediction | 112 | 138 | - | - | |
Lcy2g0570 | 492 | ProSitePatterns | Zinc finger Dof-type signature. | 149 | 185 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy2g0570 | 492 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 491 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0494 | Lcy-Chr11:10988537 | Lcy2g0570 | Lcy-Chr2:4891683 | 5.14E-68 | dispersed | |
Lcy2g0570 | Lcy-Chr2:4891683 | Lcy5g1831 | Lcy-Chr5:41135274 | 3.86E-33 | dispersed | |
Lcy10g0543 | Lcy-Chr10:14179367 | Lcy2g0570 | Lcy-Chr2:4891683 | 1.18E-115 | transposed | |
Lcy2g0570 | Lcy-Chr2:4891683 | Lcy5g2541 | Lcy-Chr5:48173679 | 5.92E-143 | wgd | |
Lcy2g0570 | Lcy-Chr2:4891683 | Lcy7g0290 | Lcy-Chr7:2507911 | 3.41E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19713 | None | None | None | None | Lcy | TF |
Pathway information
