Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0589 ATGGAGGCTGAACCTCTGCCAACCAAAGATGATAGAGTTCAACCAATTGGAGGAGATCATGAAGAAGCTGCTGCCAAACAAGATGTTCTTCACAAGGTGACTTTTATGGCTGACTTGGAAAAGCCCTCCATGGAACCCCTCTCAGTCGCATCAGCTTCTTCAACTTGGAAGGAAGAGGATGATCATCACCATGAACAAAGAATCAAAATGGCGAAAGTTGAAATGAGCCAAGTGAGAGAAGAAAACCAGAGGCTAAAAAAGAGTTTGGATCAAATGATGAAGGATTACGAGAGCCTGAAAAGGCAGTTCCACGACATAACAACTCAAAGGGAAGGGAAAAAATCCACACAAACAAGTGCGAGTACCATTAACAATGATGAGGTTGAAGAAGTGGACGACATGGTTTCACTCACATTGGGAAGATTCTCAAGCTGCGATCAAAACAAGAACAACACTTCCTCAGAAAGAAAATTGGATCATAAACTGTTGGAGCTGAAAACCCCATCAAATAATGATCACATTCAAAGCCCAACTGATAGTGAAGCTAAAGATCAGGAAGAAGCCGGAGAGACTTGGCCGCCGAGTAAAGCGTTGAAGGGTTTGCCAGCTCCGGCGACCGGAGAAGATGAAGTCTCTCAGCAGAATCCTCCCAAGAAAACTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCTTCATGTCCAGTTAGGAAACAGGTACAAAGGAGTGTTGATGATATTTCCATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTTCCTGTTTCAGCCATGGCCATGGCTTCCACGACCTCCGCGGCTGCCTCGATGCTCCTCTCGGGCCCTTCCTCCTCCTCCACCTCTCGGCCCGGACTTAACCCTTCGTCGTCGATCTCCACCGCCGCAAACCTCCATGGAATGAACTTGTACCTCTCCAACAACACCAACACAAAGCAATTCTACTTGCAAAACTCTTCAATGCTATCTTCTTCTCTAAACCACCCCACAATCACTTTAGACCTCACTTCAAACCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCAATATAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGCTCTTCTCAACCCAACAACTTCATGTCTTGGAACAATAATAATAACAACCAACCTTATAATATCACCAAAAATGCAATAGGAATAGCATCATCAGACCTTTCCAAACAGCTCCCTCTCCATAGTAACATCTATCAAGCCTGCCTTCAACATTTTGCCAAACCTTCAACTCCGCCGCTCCCGCTCCCGCCGCCGTCGCCTCTGCCCGACACGATAGCGGCAGCAACCAAGGCAATTACGTCGGACCCGAGCTTCCAATCGGCATTGGCGGCCGCCCTCAGCTCGATCATCGGCGGCGAGGGAATCCAGCCTGTGTCTAATGTGTGTGGATCAAGTATGGGGTTTCAGGGTCCTCCATCGTTGATATGCTCCAGCTCCAAGAGTCCTTCTTCATCTCCTGGTGATAGTAGAGACAATAATACAAAATGA 1650 46.97 MEAEPLPTKDDRVQPIGGDHEEAAAKQDVLHKVTFMADLEKPSMEPLSVASASSTWKEEDDHHHEQRIKMAKVEMSQVREENQRLKKSLDQMMKDYESLKRQFHDITTQREGKKSTQTSASTINNDEVEEVDDMVSLTLGRFSSCDQNKNNTSSERKLDHKLLELKTPSNNDHIQSPTDSEAKDQEEAGETWPPSKALKGLPAPATGEDEVSQQNPPKKTRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSSTSRPGLNPSSSISTAANLHGMNLYLSNNTNTKQFYLQNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFQYKIPSTYPPKYPFTSLDFGSSQPNNFMSWNNNNNNQPYNITKNAIGIASSDLSKQLPLHSNIYQACLQHFAKPSTPPLPLPPPSPLPDTIAAATKAITSDPSFQSALAAALSSIIGGEGIQPVSNVCGSSMGFQGPPSLICSSSKSPSSSPGDSRDNNTK 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5035337 5039892 - Maker00022264 Lcy2g0589 625354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0589 549 Pfam WRKY DNA -binding domain 234 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0589 549 MobiDBLite consensus disorder prediction 311 331 - -
Lcy2g0589 549 Coils Coil 68 109 - -
Lcy2g0589 549 MobiDBLite consensus disorder prediction 527 549 - -
Lcy2g0589 549 MobiDBLite consensus disorder prediction 44 66 - -
Lcy2g0589 549 MobiDBLite consensus disorder prediction 102 129 - -
Lcy2g0589 549 FunFam probable WRKY transcription factor 31 218 295 - -
Lcy2g0589 549 SMART WRKY_cls 233 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0589 549 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0589 549 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 55 507 IPR044810 GO:0003700(InterPro)
Lcy2g0589 549 Gene3D WRKY domain 218 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0589 549 MobiDBLite consensus disorder prediction 152 167 - -
Lcy2g0589 549 MobiDBLite consensus disorder prediction 141 218 - -
Lcy2g0589 549 SUPERFAMILY WRKY DNA-binding domain 226 294 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0589 549 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0589 Lcy-Chr2:5035337 Lcy4g0547 Lcy-Chr4:6562441 7.39E-46 dispersed
Lcy6g0540 Lcy-Chr6:5106307 Lcy2g0589 Lcy-Chr2:5035337 9.02E-48 transposed
Lcy2g0589 Lcy-Chr2:5035337 Lcy5g2291 Lcy-Chr5:45887555 1.70E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19719 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0589 - - - 0.0