Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0599 ATGGAAGAAAAGGGCGAGAAGCCTGAGGTTCTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATTGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCGGCTGCTGAGGAACGCCTTGTAATTTTTGGTCACAACAAGCTTGAAGAGAAGAAGGAAAGTAAATTCTTAAAGTTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCACTGTTGCTTATCAACTCAACAATCAGTTTTATTGAGGAAAACAATGCCGGTAACGCTGCAGCTGCTCTAATGGCTAGTTTAGCTCCCCAAGCCAAGGTTCTACAATTTTCTGCTCTTACAGGCGAGTCCCTTCCTGTTACCAAAGGTCCCGGCGACGGCATATACTCTGGTTCTACTTGCAAACAAGGAGAGATTGAAGCGGTGGTCATTGCCACTGGTGTCCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGCCACTTCCAAAAGATTCTGAACCTTGCGCACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCCGTGATTGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATTGTAGGAAGGAAAGTGCTGGAGGTCCATGGCAGTTTATTGGCCTTCTGCCACTGTTCGACCCACCAAGGCATGATAGTGCAGAGACAATAAGGAGGGCTTTAAATCTTGGAGTGAATGTGAAGATGATTACTGGTGACCAGCTGGCCATAGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGACGAGTCCATAGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGTTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGTCTTCAAGCAAGGAAACATATCTGTGGGATGACTGGCGATGGAGTAAATGATGCTCCAGCCCTTAAAAAAGCAGACATAGGCATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGATATAGTCCTTACAGAGCCTGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCGATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTCATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCGAAAGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCGGAAATTTTTACTACTGGCATTATACTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCTTATAAAACAGACTTCTTTCCACGGATCTTTGGGGTGTCAACTCTTGAGAAAACTGCACATGATGACATTAGGAAACTTGCCTCAGCGATATATTTGCAAGTAAGTACTATAAGTCAGGCTCTCATATTTGTTACACGCTCGCGAAGTTGGTCGTATGTGGAGCGCCCTGGGTTACTGTTGGTTGCAGCTTTTCTGGTTGCACAACTGGTTGCTACTTTAATTGCGGTTTATGCAAATTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATCTCATCAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCCTTTACAAGGCAAAAGGACTTCGGTAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCTGACGCCAAGATGTTCCACGAGCGAACTCACTTCACCGAGCTCAATCAGATGGCCGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATCGACACGATCCAGCAAGCTTACACAGTGTGA 2187 44.99 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKVLQFSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDCRKESAGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRIFGVSTLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHERTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5111766 5119875 - Maker00022229 Lcy2g0599 625364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0599 728 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Lcy2g0599 728 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 625 IPR023298 -
Lcy2g0599 728 FunFam Plasma membrane ATPase 256 410 - -
Lcy2g0599 728 Pfam haloacid dehalogenase-like hydrolase 219 376 - -
Lcy2g0599 728 Gene3D - 677 728 - -
Lcy2g0599 728 NCBIfam HAD-IC family P-type ATPase 337 450 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 Coils Coil 679 699 - -
Lcy2g0599 728 PRINTS H+-transporting ATPase (proton pump) signature 362 378 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 PRINTS H+-transporting ATPase (proton pump) signature 393 418 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 PRINTS H+-transporting ATPase (proton pump) signature 219 237 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 PRINTS H+-transporting ATPase (proton pump) signature 334 350 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 PRINTS H+-transporting ATPase (proton pump) signature 538 559 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0599 728 FunFam ATPase 4 plasma membrane-type 347 593 - -
Lcy2g0599 728 Gene3D - 146 197 - -
Lcy2g0599 728 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Lcy2g0599 728 SUPERFAMILY Calcium ATPase, transduction domain A 143 193 IPR008250 -
Lcy2g0599 728 FunFam Membrane H(+)-ATPase1 202 262 - -
Lcy2g0599 728 SUPERFAMILY HAD-like 254 408 IPR036412 -
Lcy2g0599 728 Gene3D - 198 262 IPR023299 GO:0000166(InterPro)
Lcy2g0599 728 Gene3D - 71 145 - -
Lcy2g0599 728 Gene3D - 364 624 - -
Lcy2g0599 728 Pfam E1-E2 ATPase 142 207 - -
Lcy2g0599 728 PANTHER CALCIUM-TRANSPORTING ATPASE 145 207 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0599 Lcy-Chr2:5111766 Lcy9g0731 Lcy-Chr9:24866584 0 dispersed
Lcy10g1984 Lcy-Chr10:43942630 Lcy2g0599 Lcy-Chr2:5111766 0 wgd
Lcy2g0599 Lcy-Chr2:5111766 Lcy5g2280 Lcy-Chr5:45789954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0599 K01535 - csv:101217264 986.097