Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0601 ATGGGGCGTAAGAAGAAAGTCATTGATCCGCGTTCTAAACAATCTCCGGCGGCTCGAGGAGTCGCCGTTGATGTTCCAAGTTTAGCGAACGCCGTCGACCACAGTTCGATACCTGATAAGGCAAGTAATCACAACCAAAGTAGGATCGAGCCGGTGTTTGTCAATGAATCGGATGGCTTGTCTTATTCCTCAATTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTGAAAGTAGCATCCATTATTGATGACCTGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTTGAGCTCTCACCAAACTCGATCGAGTTTTCCCATTTCTATGCAAATTTGCTGTACGAGGTTGCAAATGATGCGAAAGAGTATGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAACCCAATCGATCCCGCTAAGGAAAGCTTGCAGGATGAAAAGAATCAGAAGATACCTACTGCAGAAGCACGGATTACACACGTTCAGACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCCCTATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATTAGGAGAGTGACAGAGGACCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGGCAAATGAAATTAAGAAGGCAACCAAAACGCCTGAGGAACGAAGGAAGGAGATCGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTCTGAGACACCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGGCCCTGGATTCATCTTCTGGGTCTGGTACAAGAGTTGGTGAGCGGCGGAAACATGGAAATTTACGGAAACATGGATCGTCAGCTGAAAGGAGGGATTGGGTTCATTCTTTTTGGAATTCCATGAGTTTGGAATCAAAGAAAGATTTGCTTAAGATCAAGACAAGTGATCTTAAGACTCATTTTAGTTCTTCGAAGGATGCTTCGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGCTTGCTGCAGATGTGATGAAAAATTTGTGGATTCAGAATCCCATATGCACCATGTGGTTCAGGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCTTGCCACAGAATGTTGACAATGAATGGACCGAAATGCTTCTTAATTGCTCTTGGAAAGCGTTGGATGTTTCAGCTGCAGCTAAAATGCTCACAGATCAAAGAAAGTTCAAAGATTCCGAGTTGGATGAAGATATCTGCTCACAGCATCATTCAGAATCTGATGACTGTTTCAAAGATGCATGGGATTCTTCTCCAGTGAAGCATAGATATGGGAATAGTTTAAATGAATGCAATCTTTATGAAAAAGTTAGCAACAACGGATTTAAGACCTGTAATGAAAACCAGGGTTCTTTGGTATCATATTCCTTATCTAATAGCTTTCCAGTATCTGATGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTACTTATTCGACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAATTTACAATGGATGAGTTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGCATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTCTTGCAAGAACTATGTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAACCTGTTGAAGTCAAAGAGAAAGTTGTTCTCAACAGAGATGCGTCGCTTCTCATCCTCAATGAGTGTTTTCTGTCATCTGATATCCCTCATCCCAATGGTCAGGTTGCAGCCACAGATCATATGCCTGCAACTGCAAAGGATGTTATTGCAAATGGGGTTCTGTCTGAAGTCGATCCTTTTCTATCCTGGATATATGGAGGTCCCTCTAGTGGGGAGCAGTTAGCATCATGGGCACAATCAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGCCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCATTGCAGTCAGTAGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAACTGTGACTGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAGACGAAGAGATGAGCTTATTGAGGCTGAAAATGACGTGATGTTTATCGGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCTGAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAAATTTTGCCAGCGTACCTCCTCCATTATGTGATCTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATCTGCATCAAGTTGATACTTGTATTGAAGTTGCAATACAGAGGCAGAAAGAACAGTTATCTATCGAGATTAGCAAAATTGATGCACGGATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTTGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACAAAGAAGTCTGATGCTGCACGAGAAGCATTTTTAGCTGAATTGGCACTGGATTCAAAAAAGGGTATCAGAGGAGGAAATGATAATTCAAGACATGCACATGAGAAGCCGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTGGATGGAGATCCCTTTCAAGTTTCATCTGATGGTGATGCTGCAGAGGTGGACATTGCTGTTTTTGAGAATGGTGATGCTTTAAGACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGAAGAACTTGGCTGTGGCGGTACATGATAATCTCATTGGACTTGTCCCCAATGTTGAGGGTGCTGATGAGTATCTTAAGCCCTCTGTGGTGGATCAATTGGCAGAAAATGATTTGGTTGCCGACTTGTCTAGGAATGGTCCTGCAATGCAAGGCGCTTTTTCAGGTATATCCAATGTAGGAGTTCTGGAGAATAGTCTGCCATCTTCTGACAGGAGGAAGGGGAGGAAAGGTAGACGGCACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAATGTAACCTTTGACAACCAATTGAATGAGCAAGTTAGATATCATGACAATCTCCTAGTAGATAGTGTTAATCCACTTTCCGAAGATAATAGTACAAAGACTTTGAGACGACATGTAGAGGATGATGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTACAAATTCCAGGACACCGTTGATCAGTTATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACTCAATGTTGAAAATGTGGGAGCAGATATATTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAATCCTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATATTCGCTGCCTTGAGCATGGCATCTGCAGATGCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCCAGCGTTTCTGATACAGAATCAGTTGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGCAACTTGTTTGGTACATTCCATCTTCGGAATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCAAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGTTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCGCCACACGTGTTCACAACTGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCTACATTAGCTGCTCTAAGTACTGAGATAGATATCAGCGTTCTTTATCGGGGTCTAGATCCAAAGCACACCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCACTGTTTTGCCTACAGTCACGACAAAAAATGCTGGATAATGTATGATGATAGAACTGTTAAGGTAATTGGTGGCTGGCCTGACGTTCTTACCATGTGTGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4869 42.0 MGRKKKVIDPRSKQSPAARGVAVDVPSLANAVDHSSIPDKASNHNQSRIEPVFVNESDGLSYSSIKLECERALTALRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTICVKVASIIDDLNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEVANDAKEYEEVVQECERALGIENPIDPAKESLQDEKNQKIPTAEARITHVQTELRQLIQKSNIYSLSSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSETPQMQNEGGKADRALDSSSGSGTRVGERRKHGNLRKHGSSAERRDWVHSFWNSMSLESKKDLLKIKTSDLKTHFSSSKDASANEVISEALSFYDANKTWKFWACCRCDEKFVDSESHMHHVVQEHMGNLLPKMQSILPQNVDNEWTEMLLNCSWKALDVSAAAKMLTDQRKFKDSELDEDICSQHHSESDDCFKDAWDSSPVKHRYGNSLNECNLYEKVSNNGFKTCNENQGSLVSYSLSNSFPVSDDSERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFTMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELCQSCGIGRYSDKSTGQIEDSKSDKQPVEVKEKVVLNRDASLLILNECFLSSDIPHPNGQVAATDHMPATAKDVIANGVLSEVDPFLSWIYGGPSSGEQLASWAQSKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKRETVTEFIPKSYESVLRRRRDELIEAENDVMFIGSRFELDAVTNVLKEAEALNVNQFGYEENFASVPPPLCDLESGEDEDWRAKDYLHQVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAAREAFLAELALDSKKGIRGGNDNSRHAHEKPKEKKRSKEFRKVKDSKVVSGPEQDVLHDEAVDGDPFQVSSDGDAAEVDIAVFENGDALRLQEEEFRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEKNLAVAVHDNLIGLVPNVEGADEYLKPSVVDQLAENDLVADLSRNGPAMQGAFSGISNVGVLENSLPSSDRRKGRKGRRHKVSIKPVDGNQPSPSDKDNVTFDNQLNEQVRYHDNLLVDSVNPLSEDNSTKTLRRHVEDDEERFQADLKKAVRQSLDAFQEQQKLPLITNSRTPLISYGEVDSNGLPSNELNVENVGADIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSVSDTESVESNCMGSWDCASATCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESADDITATLAALSTEIDISVLYRGLDPKHTHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDRTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5136152 5145643 + Maker00021901 Lcy2g0601 625366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0601 1622 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1289 1621 IPR028889 -
Lcy2g0601 1622 Pfam Protein of unknown function (DUF627) 72 181 IPR006866 -
Lcy2g0601 1622 Coils Coil 119 139 - -
Lcy2g0601 1622 Coils Coil 1047 1086 - -
Lcy2g0601 1622 MobiDBLite consensus disorder prediction 963 996 - -
Lcy2g0601 1622 SUPERFAMILY Cysteine proteinases 1289 1619 IPR038765 -
Lcy2g0601 1622 SUPERFAMILY TPR-like 65 182 IPR011990 GO:0005515(InterPro)
Lcy2g0601 1622 Pfam Ubiquitin carboxyl-terminal hydrolase 1290 1598 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Lcy2g0601 1622 CDD Peptidase_C19 1381 1619 - -
Lcy2g0601 1622 Pfam Protein of unknown function (DUF629) 341 873 IPR006865 -
Lcy2g0601 1622 Gene3D Tetratricopeptide repeat domain 61 205 IPR011990 GO:0005515(InterPro)
Lcy2g0601 1622 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Lcy2g0601 1622 MobiDBLite consensus disorder prediction 1 22 - -
Lcy2g0601 1622 Gene3D Cysteine proteinases 1277 1620 - -
Lcy2g0601 1622 PANTHER UBIQUITIN SPECIFIC PROTEINASE 18 1620 IPR052398 -
Lcy2g0601 1622 MobiDBLite consensus disorder prediction 961 996 - -
Lcy2g0601 1622 MobiDBLite consensus disorder prediction 289 334 - -
Lcy2g0601 1622 MobiDBLite consensus disorder prediction 1146 1187 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0601 - - - 0.0