Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0603 ATGGAAGTTTTAGGGTTTATCACCAACAAATGGATTGCAACGGCCCTCGGGATTTGGATCCAATGCATCTGCGGTGCCTCCTACACCTTCAGCATCTATTCTTCGGCTCTCAAATCCACTCAGGGCTACGATCAATCCACCCTCGACACCGTTTCCGTTTTCAAGGACATCGGCGCCAACGCCGGCGTCATTTCCGGCTTTCTCTACTCCGCCGTCACTCCCGCCTCCTGCCGATCGAGCTCCGCTGGGCCATGGGTGGTCCACGCGGCGGGAGCGATTCAGTGCTTCCTCGGATATATTTTCATCTGGGCGGCCGTCTCCGGTGTGATCGATCGGCCGCCGGTGCCGGCGATGTGCTTCTTCATGTTTCTGGCTGCACATGCGCAAACGTTTTTCAATACCGCGAATGTGGTGACCGGCGTTCACAATTTTGCGCACTATAGCGGGACGATTGTCGGCATCATGAAGGGATATCTTGGTCTTAGTGGAGCACTGCTAATCCAAGTTTATAACACGGCGTGCAATGGAGAACCAAGTAATTTTCTCCTCATGCTGGCTGTATTGCCCACACTTCTTTCCATCATGTTCATGTGGTTTGTTAGAATTGACAAAACAGCGTCTAGAAATGAGATGAAGCATTTGAACTCATTGTCTGCGCTTGCTGTAATTGTTGCTTTTTACTTGATGGTTGTCATCATTTTGAACAACACTTTCACCCTTTCATCATGGACTCGTTTCATTACATTCTCCATACTCTTGATTCTCCTTGCTGCTCCTCTTGGAATCGCCATTAATGCTCAGAAGGAGGAGAACTTTAGAGGGTCATCTCCATCACTCTTCACTGGAGAAAGTCCTGTTCTTAACAAACCCAAGTCAGTGAATGCAGAGGATTCTGTGGAATATCACGAGTTGCCGAGTGATGAGAGCCAGAGAATGGCTGCTGCAAACTCCAAACCTCCTCAATCCATGAATGTCTTGGAAGCTATACGCACCGTAAACTTCTGGCTGTTGTTTCTTGCCATGGTGTGTGGAATGGGTTCTGGATTGGCCACAATAAACAACATGAGCCAGCTTGGCCAATCTCTTGGCTACACAGCAACAGAGACAAAGACATTCGTTTCCTTGTGGAGTATATGGAACTTTCTTGGACGTTTTGGAGCTGGCTACACCTCTGATTTTCTTCTCCACTCATATGGCTGGGCAAGGCCATTGTTAATGGCACTTACTCTTCTGATAATGAGTGGTGGCCACATCGTGATCGCCTCTGGTTTCTCTGGAAATCTCTATGTGGGTTCAATTCTTGTTGGCATATGCTACGGCTCACAGTGGTCACTGATGCCCACAATCACTTCAGAGATATTTGGCTTAGAGCATATGGGAACTATTTTCAACACCATAGCCATAGCCAGCCCTCTGGGGTCTTACATCTTTTCGGTTCGAGTCATCGGCTACATTTACGACCGAGAAGCCGCCGGTAAACATGGCTCCTGCTCCGGCACACACTGTTTTGTAGTATCTTTTCTGGTCATGGCCGCCGTGGCTTTCTTGGGTTTTCTTGTTGCTGCTGCTCTCTTCTTTCGAACCAGGAGATTTTACCGACTGGCTTTGCAAAGAAGAGTTCATGAATTGAGTGAATATGCCTTTGCAGATATATGGATCGCTACAGTTGCCAGCATTTGGATTCAATGCATCTGCGGCCCATCCTACACCTTCGGCATCTACTCCTCCGCCCTCAAATCAACTCAAAACTACCATCAATCCACTCTCGACACTGTCTCCGTCTTCAAAGACATCGGCGCCACCGCCGGAGTTCTCGCCGGCTTCCTCTACTCCGCCGTCGTCTCCACCAATCGCCCACGTGGCCCCTGGATCGTCCTCACCGTCGGAGCAATCCAGTGCTTCCTCGGTTACATTTTCATATGGGCCGCCGTCTCCGGCCTAATCCCTCGGCCGCCGGTGCCGGCCATGTGCCTGTTCATGTTTCTAGCCGTCCATGCCCAAGTTTTCTTCAACACGGCCAATGTCGTCACTGGCGTCCATAACTTCCAGCTCTACGGCGGCACCATTCTCGGCATTCTAAAGGGATTTCTAGGTCTCAGTGGAGCAGTTCTGATTCAATTCTCGAACACACTCTGCAATCGAGACCCTGTAGCATTTCTTTTAATGCTTGCGATCTTGCCGGCGCTCACGACGCTTCTGCTCATGAGATTCGTCGTCATCGACAAAACAGAGACCGGAAACGAATCGAAACATTTGAACTCCTTCTCGTCAATCGCTCTGATAATCTCCGGTTATCTCACGATTCTCATCATTTTAGACAATTCCCTCACCCTTCCAACATGGGCTCGCATCTTCGCCTTCGTTCTACTCCTAACCCTCATCGCTTCCCCTCTCGGAATCGCAATCAGAGCAAAAACAGAGGACTCTGTTTTCAGAACCAAGCTTGAAGAATCCCTTGAATACCGTCAAATTCCCAGTGAAGAACAGACCCACGATCAGCAAGTGATCGTTTCCGATAGAGACATTGATCTAATCGAGGCCACTGGAACTTTAGACTTCTGGGTATTGTTTCTTTCGATAATGTGCTCGATGGGTTCTGGATTGGCCACCATAAACAACATGAATCAACTCGGCCAATCTCTCGGCTACGGCACAGTCGAGATCAACACCTTGGTTTCCTTGTGGAGCATTTGGAGTTTCCTTGGCCGCCTCGGAGCAGGTTATATTTCTGATATTCTCCTACGCAAATTAGGCTGGGCAAGGCCATTGTTAATGGCCATAACTCTGCTAGCAATGAGCGTCGGCCACATCATAATTGCTTTGGGCTTCACTGGGAATTTATACGTTGGATCAGTGATCGTGGGGATTTGTTATGGAGCTCAAATCTCGCTGATGCCTGCAATTACGGCGGAGATATTTGGAATAAAGCATATGGGCACCATTTACAACGCCATCAATGTGGCCTGTCCGATTGGATCTTATATTTTATCTGTTAGAATCGTTGGGTTCATATATGACAGAGAAGCCTCTTCTGAAGACAACTCCTGCTCCGGCAAACACTGTTTTATGATGTCTTTTCTGATCATGGCGGCTGTGGATTTGCTGGGTTTTGTTGTTGCTGTTGCTCTGTTCTTTCGGACCAGGAGATTCTATCGACTTCTTGTGCAGAGAAGACTCAAAGATTAG 3186 48.52 MEVLGFITNKWIATALGIWIQCICGASYTFSIYSSALKSTQGYDQSTLDTVSVFKDIGANAGVISGFLYSAVTPASCRSSSAGPWVVHAAGAIQCFLGYIFIWAAVSGVIDRPPVPAMCFFMFLAAHAQTFFNTANVVTGVHNFAHYSGTIVGIMKGYLGLSGALLIQVYNTACNGEPSNFLLMLAVLPTLLSIMFMWFVRIDKTASRNEMKHLNSLSALAVIVAFYLMVVIILNNTFTLSSWTRFITFSILLILLAAPLGIAINAQKEENFRGSSPSLFTGESPVLNKPKSVNAEDSVEYHELPSDESQRMAAANSKPPQSMNVLEAIRTVNFWLLFLAMVCGMGSGLATINNMSQLGQSLGYTATETKTFVSLWSIWNFLGRFGAGYTSDFLLHSYGWARPLLMALTLLIMSGGHIVIASGFSGNLYVGSILVGICYGSQWSLMPTITSEIFGLEHMGTIFNTIAIASPLGSYIFSVRVIGYIYDREAAGKHGSCSGTHCFVVSFLVMAAVAFLGFLVAAALFFRTRRFYRLALQRRVHELSEYAFADIWIATVASIWIQCICGPSYTFGIYSSALKSTQNYHQSTLDTVSVFKDIGATAGVLAGFLYSAVVSTNRPRGPWIVLTVGAIQCFLGYIFIWAAVSGLIPRPPVPAMCLFMFLAVHAQVFFNTANVVTGVHNFQLYGGTILGILKGFLGLSGAVLIQFSNTLCNRDPVAFLLMLAILPALTTLLLMRFVVIDKTETGNESKHLNSFSSIALIISGYLTILIILDNSLTLPTWARIFAFVLLLTLIASPLGIAIRAKTEDSVFRTKLEESLEYRQIPSEEQTHDQQVIVSDRDIDLIEATGTLDFWVLFLSIMCSMGSGLATINNMNQLGQSLGYGTVEINTLVSLWSIWSFLGRLGAGYISDILLRKLGWARPLLMAITLLAMSVGHIIIALGFTGNLYVGSVIVGICYGAQISLMPAITAEIFGIKHMGTIYNAINVACPIGSYILSVRIVGFIYDREASSEDNSCSGKHCFMMSFLIMAAVDLLGFVVAVALFFRTRRFYRLLVQRRLKD 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5160545 5166837 + Maker00022479 Lcy2g0603 625368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0603 1061 CDD MFS_Mch1p_like 552 1036 - -
Lcy2g0603 1061 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 532 - GO:0016020(PANTHER)
Lcy2g0603 1061 Gene3D MFS general substrate transporter like domains 752 1052 IPR036259 -
Lcy2g0603 1061 CDD MFS_Mch1p_like 10 517 - -
Lcy2g0603 1061 Pfam Major Facilitator Superfamily 856 1049 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy2g0603 1061 SUPERFAMILY MFS general substrate transporter 753 1049 IPR036259 -
Lcy2g0603 1061 MobiDBLite consensus disorder prediction 275 312 - -
Lcy2g0603 1061 SUPERFAMILY MFS general substrate transporter 216 530 IPR036259 -
Lcy2g0603 1061 ProSiteProfiles Major facilitator superfamily (MFS) profile. 851 1061 IPR020846 GO:0022857(InterPro)
Lcy2g0603 1061 Pfam Nodulin-like 552 801 IPR010658 -
Lcy2g0603 1061 Pfam Nodulin-like 10 263 IPR010658 -
Lcy2g0603 1061 Gene3D MFS general substrate transporter like domains 324 532 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0603 Lcy-Chr2:5160545 Lcy2g0605 Lcy-Chr2:5176176 5.92E-208 dispersed
Lcy2g0603 Lcy-Chr2:5160545 Lcy2g0604 Lcy-Chr2:5171988 1.14E-304 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0603 - - - 0.0