Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0604 ATGGAAGCTCCTTCTCTGAGCAACAGATGGATCGCTACAGTTGCAAGCATTTGGATTCAATGCATCTGCGGCCCATCCTACACCTTCGGCATCTACTCCTCCGCCCTCAAATCAACTCAAAACTACCATCAGTCCACTCTCGACACCGTCTCCGTCTTCAAAGACATCGGCGCCACCGCCGGAGTTCTCGCCGGCCTCCTCTACTCCGCCGTCGTCTCCACCGATCGCCCCCGTCGCCCCTGGATCGTCCTCACCGTCGGAGCAATTCAGTGCTTCCTCGGTTACATCTTCATGTGGGCCGCCGTCTCCGGCCTAATCCCTCGGCCGCCAGTGCCGGCCATGTGCCTGTTCATGTTTTTAGCCGTCCATGCCCAAGTCTACTTCAACACGGCCAACGTCGTCACTGGCGTCCATAACTTCCAGCTCTACGGCGGCACCATCGTCGGCATTCTAAAGGGGTTTCTGGGTCTTAGTGGAGCAGTTCTGATCCAATTCTCTAACACATTCTACAATGGAAACCCAGTAAATTACCTTCTGATGTTAGCGATCTTGCCGGCGCTTACGACGCTTCTGCTTATGAGATTCGTCGTCATCGACAAAACAGAGACCGGAAACGAATCGACCCATTTGAATTCCCTCTCCTCAATCGCTCTGATAATCTCCGGTTATCTCACGATTCTCATCGTTTTGGACAACGTACTCACTCTACCAACATGGGCTCGCCTCTTCACTTTCATTTTACTCCTCGCCCTTCTCGCTTCTCCTCTCGGAATCGCAGTCAGAGCACAAACAGAGGACTCTGTTTTCAAGACCAAGCTTCAGAACACCGACGATTCCGTTGAATATCATCGAATTCCCAGTGAAGATCAGAGAAATGAACAGCTAACGATCGTTACAGATGGAGAAATGAACGTAATCGAGGCAATTGGCACGGTGAATTTCTGGATACTGTTTTTCGCGATGATGTGCGGAATGGGCTCTGGGTTAGCCACCATAAACAACATGAATCAACTCGGACAATCTCTGGGCTACGGAACAGTGGAAATCAACACATTCGTTTCACTTTGGAGCATTTGGAATTTCCTCGGGCGGCTGGGATCTGGCTATGCCTCTGATCTTCTCCTCTGGAAATTAGGCTGGGCGAGGCCATTGTTAATGGCCATCGCCTTGCTTACGATGAGCGTCGGCCATATCATCATAGCTTCGGGATTCTCAGGGAATCTGTACTTGGGATCGGTGATTGTGGGGATTTGTTACGGCGCTCAATGGTCGCTGATGCCGGCGATTCCGGCGGAGATTTTTGGAATTAGACATATGGGTACAATTTACAACACCATCACTGTAGCCAGTCCGATTGGATCTTATGTTTTGTCTGTTAGAGTTATTGGGTATATTTACGACAGAGAAGCCTCCGCCGGAGACAACTCCTGCTCCGGCAAACACTGCTTTATTACGTCTTTTCTGATCATGGCGGCTGTGGCTTTCCTGGGTTTTGTTGTTGCTGTTGCTCTGTTCTTTCGAACCAGGAGATTCTATCAAGTTCTTGTGCAGAGACGGCTCAAAGATTAG 1569 50.22 MEAPSLSNRWIATVASIWIQCICGPSYTFGIYSSALKSTQNYHQSTLDTVSVFKDIGATAGVLAGLLYSAVVSTDRPRRPWIVLTVGAIQCFLGYIFMWAAVSGLIPRPPVPAMCLFMFLAVHAQVYFNTANVVTGVHNFQLYGGTIVGILKGFLGLSGAVLIQFSNTFYNGNPVNYLLMLAILPALTTLLLMRFVVIDKTETGNESTHLNSLSSIALIISGYLTILIVLDNVLTLPTWARLFTFILLLALLASPLGIAVRAQTEDSVFKTKLQNTDDSVEYHRIPSEDQRNEQLTIVTDGEMNVIEAIGTVNFWILFFAMMCGMGSGLATINNMNQLGQSLGYGTVEINTFVSLWSIWNFLGRLGSGYASDLLLWKLGWARPLLMAIALLTMSVGHIIIASGFSGNLYLGSVIVGICYGAQWSLMPAIPAEIFGIRHMGTIYNTITVASPIGSYVLSVRVIGYIYDREASAGDNSCSGKHCFITSFLIMAAVAFLGFVVAVALFFRTRRFYQVLVQRRLKD 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5171988 5173641 + Maker00021929 Lcy2g0604 625369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0604 522 SUPERFAMILY MFS general substrate transporter 211 510 IPR036259 -
Lcy2g0604 522 CDD MFS_Mch1p_like 9 497 - -
Lcy2g0604 522 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 512 - GO:0016020(PANTHER)
Lcy2g0604 522 Pfam Major Facilitator Superfamily 318 510 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy2g0604 522 Gene3D MFS general substrate transporter like domains 311 510 IPR036259 -
Lcy2g0604 522 Pfam Nodulin-like 9 259 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0604 Lcy-Chr2:5171988 Lcy5g0317 Lcy-Chr5:3031968 3.37E-110 dispersed
Lcy2g0603 Lcy-Chr2:5160545 Lcy2g0604 Lcy-Chr2:5171988 1.14E-304 tandem
Lcy2g0604 Lcy-Chr2:5171988 Lcy2g0605 Lcy-Chr2:5176176 4.54E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0604 - - - 0.0