Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0605 ATGGCGATTTTCTGTCCCGTTTGGCAGAGTAATTCGCGGGAAATTAAGGCAGACCCCGAACTTGATCGAATCGGAAAATTCCGGATCGAGCAGAATCAAAATGGAGTCGATAGTTCGAGAGATTCACAAGTCTCACGCGACGAACAAAGAGCGGAAAGAGGAAGAGCGGAAAGCAATTTCAATTCAACGGAATTGGAAATGGAGACTTCCAGCTTAAACAACAAATGGGTATCAACAGTAGCTAGCGTATGGATTCAATGCACCAGTGGGTCTCTCTACACCTTCTCAATCTACTCCCAAACCCTCAAATCGACTCAGGGATACGATCAGTCCACTTTGGATATTGTTTCTGTTTTCAAAGACATCGGTGTCAATTGCGGCGTCCTTGCCGGCTTTCTCTACTACTATGCCGCCGCTGATGGTGATCATCGTCGGCCGTGGATTGTTCACTTGGCCGGTGCAATTCAGTGCTTCTTGGGTTACTTTCTTATGTGGGCTGCCGTTGCTGGGGTCATCCCTCAGCCGCCGGTTCCCGCTATGTGCCTTTTCATGTTGGTGGCTGCTCATGCTCAGAGCTTCTTCAACACGGCTAACGTTGTCACTGGCGTTCGGAACTTCCCCAGTTATAGTGGGACGATTGTTGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGAACAACCTACTTCGTTTCTTCTGATGCTGGCACTGCTACCAACCCTTAATTCCTTATTGTGCATGTGGTTTGTGAGAATCCACAATGTAGAGGATGGAAATGAAAAAGAGCATCTGAATACCTTATCCATAATTACTCTGCTCGTTGCTACTTACCTCATGCTCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTCTACATGTCGCTACATTTGTTCTACTTTTGATGTTGCTTGCATCTCCTCTATATATTGCAATGAGAGTCCAACAGAGAGAGTCTCGAAAGATTTTGCACCCTTCTTTTACTGAGAGTGACCAGCTGATTGGTCGCTCCAATCAAGAGATCATGGATTTTGACAATGAACGGAGAAGGGAATCTGAAGAAAGCCTGAACCTCTTTGAGGCTTTATACACCATAGACTTCTGGATACTGTTTTTTGCAACAGCTTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGATAAATACTTTGGTTTCCTTGTGGAGCATCTGGAATTTTTTTGGTCGTTTTGGAGCTGGATATGTTTCGGATTATTTTCTGCATGCCAAAGGATGGGCTAGGCCATTATTCATGTTCATCACTCTGACATCCATGAGCATTGGACATGTAGTGATTGCCTCTGGCCTGCCTGGTGCTCTTTTTGCTGGTTCGGTAGTTGTGGGTGTTTCTTACGGGTCTCAATGGTCACTAATGCCAACAATTACTTCTGAAATATTTGGTGTTGTACACATGGGTACTATATTCAATGCCATTACAATAGCAAGCCCTGTTGGATCTTATATATTTTCTGTTAGAGTTGTTGGGTATATATATGACAAGGAAGCATCAGGTGAAGGAGATACTTGTACTGGAACTTACTGCTTCATGTTATCATTTCTGATTATGGCTTTTGCCACCCTTTTGGGCTCTTTAGCAGCCCTTGGCTTATTTTTCTGGAGAAGAAGTTTTTACAATCAAGTTGTTTTTAGAAGGCTGCAACGATCATCGAGTGGATAA 1782 43.43 MAIFCPVWQSNSREIKADPELDRIGKFRIEQNQNGVDSSRDSQVSRDEQRAERGRAESNFNSTELEMETSSLNNKWVSTVASVWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDIVSVFKDIGVNCGVLAGFLYYYAAADGDHRRPWIVHLAGAIQCFLGYFLMWAAVAGVIPQPPVPAMCLFMLVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNEQPTSFLLMLALLPTLNSLLCMWFVRIHNVEDGNEKEHLNTLSIITLLVATYLMLKIVLEHIFTFQFPLHVATFVLLLMLLASPLYIAMRVQQRESRKILHPSFTESDQLIGRSNQEIMDFDNERRRESEESLNLFEALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINTLVSLWSIWNFFGRFGAGYVSDYFLHAKGWARPLFMFITLTSMSIGHVVIASGLPGALFAGSVVVGVSYGSQWSLMPTITSEIFGVVHMGTIFNAITIASPVGSYIFSVRVVGYIYDKEASGEGDTCTGTYCFMLSFLIMAFATLLGSLAALGLFFWRRSFYNQVVFRRLQRSSSG 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5176176 5182999 + Maker00022210 Lcy2g0605 625370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0605 593 CDD MFS_Mch1p_like 75 560 - -
Lcy2g0605 593 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 74 580 - GO:0016020(PANTHER)
Lcy2g0605 593 SUPERFAMILY MFS general substrate transporter 72 264 IPR036259 -
Lcy2g0605 593 MobiDBLite consensus disorder prediction 32 59 - -
Lcy2g0605 593 Pfam Nodulin-like 75 325 IPR010658 -
Lcy2g0605 593 MobiDBLite consensus disorder prediction 41 59 - -
Lcy2g0605 593 Gene3D MFS general substrate transporter like domains 7 263 IPR036259 -
Lcy2g0605 593 SUPERFAMILY MFS general substrate transporter 281 576 IPR036259 -
Lcy2g0605 593 Gene3D MFS general substrate transporter like domains 276 573 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0548 Lcy-Chr12:6673485 Lcy2g0605 Lcy-Chr2:5176176 4.54E-78 dispersed
Lcy2g0603 Lcy-Chr2:5160545 Lcy2g0605 Lcy-Chr2:5176176 5.92E-208 dispersed
Lcy2g0605 Lcy-Chr2:5176176 Lcy5g0317 Lcy-Chr5:3031968 9.96E-103 dispersed
Lcy2g0604 Lcy-Chr2:5171988 Lcy2g0605 Lcy-Chr2:5176176 4.54E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0605 - - - 0.0