Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0610 | ATGGATCCTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCCTCTTCTTACAGCTTGGCGGCGATTTGGCCTTTCGGCGGGGAGCAGGGCGGGAGTGCATTGGGGCTCCGAATGGCTAATTTGGGTCAGAATCTTGGTGGGTTTCCAGAGAGCTCCACGAATCGCGACGGATCAATGGAGGAATCGACAGTGACGGAACAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTCAGCTCCGAGGATGAATCTTCGAAAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGGGGTATAAAAGCTGAAGTCGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCCGAAACCTTCTGAACCTCCAAAAGATTACATCCACGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCAGTGAATTCCAGGATGAATATAAGCCCTGGCATTGAAGGTTATAACTTAAAAAATATTGTTAATCAACCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGTAAGAGAATATACCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATTGGTGGAAGTTTTGAAAGAACATCTTAG | 834 | 44.96 | MDPPLVNESSFSAANPSSYSLAAIWPFGGEQGGSALGLRMANLGQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSKMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSADGKKLAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNISPGIEGYNLKNIVNQPYDAAGILYGSQAVREYTQGAQPEWLHMQIGGSFERTS | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5215513 | 5221778 | + | Maker00022009 | Lcy2g0610 | 625375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0610 | 277 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 224 | IPR036638 | GO:0046983(InterPro) | |
| Lcy2g0610 | 277 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Lcy2g0610 | 277 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
| Lcy2g0610 | 277 | SMART | finulus | 160 | 210 | IPR011598 | GO:0046983(InterPro) | |
| Lcy2g0610 | 277 | MobiDBLite | consensus disorder prediction | 105 | 144 | - | - | |
| Lcy2g0610 | 277 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 205 | IPR011598 | GO:0046983(InterPro) | |
| Lcy2g0610 | 277 | FunFam | Basic helix-loop-helix transcription factor | 151 | 223 | - | - | |
| Lcy2g0610 | 277 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 56 | 225 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Lcy2g0610 | 277 | MobiDBLite | consensus disorder prediction | 43 | 144 | - | - | |
| Lcy2g0610 | 277 | Coils | Coil | 201 | 221 | - | - | |
| Lcy2g0610 | 277 | Gene3D | - | 151 | 225 | IPR036638 | GO:0046983(InterPro) | |
| Lcy2g0610 | 277 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 204 | IPR011598 | GO:0046983(InterPro) | |
| Lcy2g0610 | 277 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
| Lcy2g0610 | 277 | CDD | bHLH_AtBPE_like | 144 | 226 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0149 | Lcy-Chr12:1815636 | Lcy2g0610 | Lcy-Chr2:5215513 | 3.36E-31 | dispersed | |
| Lcy13g2290 | Lcy-Chr13:41809983 | Lcy2g0610 | Lcy-Chr2:5215513 | 3.13E-88 | dispersed | |
| Lcy2g0610 | Lcy-Chr2:5215513 | Lcy3g1332 | Lcy-Chr3:39631989 | 1.33E-43 | dispersed | |
| Lcy2g0610 | Lcy-Chr2:5215513 | Lcy3g1006 | Lcy-Chr3:33992068 | 6.07E-38 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19722 | None | None | None | None | Lcy | TF |
Pathway information