Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0614 ATGGTGTCCGCGTCGACTCGTCAGAAAAACATGCACTCTCTTCTTGTTTCCAATCTCACCAAGCTGACGATACCCTCGTCTTCTTCTTCTTCTTCCTCTCCTCCTCCTCCTCCTTCATCCGCAGCCGCCCCTCATGACTTTGATTTCTCCGACGTATTTGGCCCGACAAATCCGTCTCCGTCATCTTTTCCGGGGGACCCACTGCAGCACCATGAACAACCAGAGGTCATTCATAACAGATCTCACTCGTTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCCACTCCTTCGCTTGCTTTTTTCCGAGAAGTCGATTCACAGAGCGAGGAGGAAGAAGATGACCTGGAAATCTCGACTGGCGATGGAGCTCAAAAGGAGAAGGAGGTGGGTGAAAGTGAGAATGATGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTGGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTTTGGTGAGGAAGAAAGGAGATTGTAAAGGGAACGGTCCCAACAATGATGGAATTTATGCTATGAAAGTGATGAGGAAGGATACCATTATAAAGAAGAATCATGTTGATTACATGAAGGCTGAGAGAGATATTCTAACAAAAGTTGCACACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTGTTTTACCATTTGTACCGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATTGTATCGGCTGTTTCACATCTTCACAACTGCGGCATTGTGCATCGGGATCTCAAGCCTGAGAACATTCTCATGGATGCTGATGGCCATGTAGTGCTTACAGATTTCGGACTGGCCAAGGAAATTAATGAATCAAGTCGGTCGAATTCATTGTGTGGAACAACTGAGTACATGGCTCCAGAAATCTTGCTTTCTAAAGGTCACAACAAAGATGCTGATTGGTGGAGCGTTGGAGTCCTCTTGTATGAGATGCTTAGTGGCCAGCCACCGTTCACACATGCTAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTGTTACAGAAGGAGCCTTCGAAAAGGTTAGGTAGCGGACCGAAAGGAGGGGACGAGATAAAAAATCATAAATGGTTTCGACCAGTGAACTGGAAGAAATTGGAATGTAGAGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACAGCAATGCCCCCAGACGACTCGCCAGCTCCAACCCCAACAGAAGGCGGACACTTCCATGGATACACTTATGTTGCTCCAAACCCTTGGCTTTCATCATCTGGATAG 1449 45.96 MVSASTRQKNMHSLLVSNLTKLTIPSSSSSSSSPPPPPSSAAAPHDFDFSDVFGPTNPSPSSFPGDPLQHHEQPEVIHNRSHSFVGPSPRLTPPTPSLAFFREVDSQSEEEEDDLEISTGDGAQKEKEVGESENDGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGDCKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEINESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPKGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGNDCTANFDNCWTAMPPDDSPAPTPTEGGHFHGYTYVAPNPWLSSSG 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5249331 5252305 + Maker00021879 Lcy2g0614 625379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0614 482 ProSitePatterns Protein kinases ATP-binding region signature. 155 186 IPR017441 GO:0005524(InterPro)
Lcy2g0614 482 MobiDBLite consensus disorder prediction 1 29 - -
Lcy2g0614 482 Gene3D Transferase(Phosphotransferase) domain 1 237 432 - -
Lcy2g0614 482 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 481 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 Pfam Protein kinase C terminal domain 434 471 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 ProSiteProfiles Protein kinase domain profile. 149 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 Pfam Protein kinase domain 151 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 SUPERFAMILY Protein kinase-like (PK-like) 146 471 IPR011009 -
Lcy2g0614 482 SMART serkin_6 149 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 MobiDBLite consensus disorder prediction 1 141 - -
Lcy2g0614 482 Gene3D Phosphorylase Kinase; domain 1 148 455 - -
Lcy2g0614 482 FunFam Non-specific serine/threonine protein kinase 146 260 - -
Lcy2g0614 482 FunFam Non-specific serine/threonine protein kinase 237 432 - -
Lcy2g0614 482 MobiDBLite consensus disorder prediction 118 134 - -
Lcy2g0614 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 SMART pkinase_C_6 414 473 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0614 482 PANTHER RIBOSOMAL PROTEIN S6 KINASE 110 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0614 Lcy-Chr2:5249331 Lcy5g0028 Lcy-Chr5:472393 3.37E-165 dispersed
Lcy2g0614 Lcy-Chr2:5249331 Lcy4g0413 Lcy-Chr4:5030181 4.58E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65720 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0614 K04688 - csv:101214867 848.966