Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0624 ATGGCGATTCCGATTCCCAGTCGGCAGCTATTCATCGGTGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCGTCAATCCTGCTACTGAAGAAATAATCGGATCTATTCCCGCAGCTACTGCGGAAGATGTAGAGTTAGCTGTAGATGCTGCTAGAAAAGCCCTTGCGAGGAATAAAGGCCAAGATTGGGCCTCTGCTTCGGGGGCTCTTCGTGCCAAATATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACATTAGATTGTGGAAAACCTCTGGAAGAAACTGCATGGGACATCGATGATGTTGCTGGGTGCTTCGAATACTATGCGGATCTTGCTGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACGTTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCTTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTAGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCGGTCACCTGTTTGGAACTAGCCGGAATTTGTAAAGATGTTGGTCTTCCACCTGGCATTTTGAATATTCTGACAGGATTGGGACCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCATGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCAGTCACCATGGAACTTGGTGGAAAAAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACGATCTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCTCGTCTACTTGTACACGAAAACATTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCAAAGATTCTATTTGGTGGAGTTCGTCCTAAGCACCTAAACAAGGGATACTTCGTCGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGCGAAGACTTTTAGTTCTGAGGATGAAGCAATTGAATTAGCAAATGATACGATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTAGGGGAATGGGGACTTGAAAATTATCTGACTGTAAAGCAGGTTACTCAATATGTATCCAATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 45.04 MAIPIPSRQLFIGGEWREPVLKKRIPVVNPATEEIIGSIPAATAEDVELAVDAARKALARNKGQDWASASGALRAKYLRAIAAKITERKSELAKLETLDCGKPLEETAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSYVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELAGICKDVGLPPGILNILTGLGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDKLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKILFGGVRPKHLNKGYFVEPAIITNVTTSMQIWREEVFGPVLCAKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLENYLTVKQVTQYVSNEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5328987 5334590 - Maker00022578 Lcy2g0624 625389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0624 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491(InterPro)
Lcy2g0624 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Lcy2g0624 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Lcy2g0624 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Lcy2g0624 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Lcy2g0624 503 CDD ALDH_F10_BADH 27 487 - -
Lcy2g0624 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Lcy2g0624 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Lcy2g0624 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Lcy2g0624 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0802 Lcy-Chr12:10447106 Lcy2g0624 Lcy-Chr2:5328987 6.81E-68 dispersed
Lcy1g0843 Lcy-Chr1:7198187 Lcy2g0624 Lcy-Chr2:5328987 2.88E-44 dispersed
Lcy2g0624 Lcy-Chr2:5328987 Lcy2g0648 Lcy-Chr2:5532930 1.42E-119 dispersed
Lcy2g0624 Lcy-Chr2:5328987 Lcy13g1208 Lcy-Chr13:28743166 3.20E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0624 K00130 - csv:101213657 943.34