Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0624 | ATGGCGATTCCGATTCCCAGTCGGCAGCTATTCATCGGTGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCGTCAATCCTGCTACTGAAGAAATAATCGGATCTATTCCCGCAGCTACTGCGGAAGATGTAGAGTTAGCTGTAGATGCTGCTAGAAAAGCCCTTGCGAGGAATAAAGGCCAAGATTGGGCCTCTGCTTCGGGGGCTCTTCGTGCCAAATATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACATTAGATTGTGGAAAACCTCTGGAAGAAACTGCATGGGACATCGATGATGTTGCTGGGTGCTTCGAATACTATGCGGATCTTGCTGAAGGGTTGGATGCAAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACGTTCAAGAGCTATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCTTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTAGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCGGTCACCTGTTTGGAACTAGCCGGAATTTGTAAAGATGTTGGTCTTCCACCTGGCATTTTGAATATTCTGACAGGATTGGGACCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCATGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCAGTCACCATGGAACTTGGTGGAAAAAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACGATCTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCTCGTCTACTTGTACACGAAAACATTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCAAAGATTCTATTTGGTGGAGTTCGTCCTAAGCACCTAAACAAGGGATACTTCGTCGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGCGAAGACTTTTAGTTCTGAGGATGAAGCAATTGAATTAGCAAATGATACGATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTAGGGGAATGGGGACTTGAAAATTATCTGACTGTAAAGCAGGTTACTCAATATGTATCCAATGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA | 1512 | 45.04 | MAIPIPSRQLFIGGEWREPVLKKRIPVVNPATEEIIGSIPAATAEDVELAVDAARKALARNKGQDWASASGALRAKYLRAIAAKITERKSELAKLETLDCGKPLEETAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSYVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELAGICKDVGLPPGILNILTGLGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHENIADEFLDKLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKILFGGVRPKHLNKGYFVEPAIITNVTTSMQIWREEVFGPVLCAKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLENYLTVKQVTQYVSNEPWGWYKSPSKL | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5328987 | 5334590 | - | Maker00022578 | Lcy2g0624 | 625389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0624 | 503 | SUPERFAMILY | ALDH-like | 5 | 490 | IPR016161 | GO:0016491(InterPro) | |
Lcy2g0624 | 503 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 267 | 458 | IPR016163 | GO:0016620(InterPro) | |
Lcy2g0624 | 503 | FunFam | NAD/NADP-dependent betaine aldehyde dehydrogenase | 12 | 277 | - | - | |
Lcy2g0624 | 503 | FunFam | Betaine aldehyde dehydrogenase | 263 | 454 | - | - | |
Lcy2g0624 | 503 | Pfam | Aldehyde dehydrogenase family | 17 | 485 | IPR015590 | GO:0016491(InterPro) | |
Lcy2g0624 | 503 | CDD | ALDH_F10_BADH | 27 | 487 | - | - | |
Lcy2g0624 | 503 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 259 | 266 | IPR029510 | GO:0016491(InterPro) | |
Lcy2g0624 | 503 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE | 1 | 502 | - | - | |
Lcy2g0624 | 503 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 24 | 483 | IPR016162 | GO:0016491(InterPro) | |
Lcy2g0624 | 503 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 287 | 298 | IPR016160 | GO:0016491(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0802 | Lcy-Chr12:10447106 | Lcy2g0624 | Lcy-Chr2:5328987 | 6.81E-68 | dispersed | |
Lcy1g0843 | Lcy-Chr1:7198187 | Lcy2g0624 | Lcy-Chr2:5328987 | 2.88E-44 | dispersed | |
Lcy2g0624 | Lcy-Chr2:5328987 | Lcy2g0648 | Lcy-Chr2:5532930 | 1.42E-119 | dispersed | |
Lcy2g0624 | Lcy-Chr2:5328987 | Lcy13g1208 | Lcy-Chr13:28743166 | 3.20E-117 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0624 | K00130 | - | csv:101213657 | 943.34 |