Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0627 ATGGCTTTCTTTCCTCCTGCCGCTTTTCTTTTTGCGACTCGCGATCTCGTCACGATCGCAGGCGGACCGTCGTACAACGTTCCATTAGGGCGAGAAGACAGCCTCGTCTCGAAATCTTCATCCGTGGAAGGCAACGTTCCGAAGGCGGATCAATCAATCGACGAGATGATCAAGCTATTCACCGCGAAAGGCTTCACGATTCAAGAAATGGTAGCGCTATACGGCGGACGCACGATCGGATTCTCAAATTGCAAGGAATTCAGCGAGCGGATCTTCAATTTCAGCAAAACAGCACCAACAGATCCAGAGATCCATCCTAAGTTCGCCGAGGCTTTGAAGAAGACCTGCGCCGGTTACGAGAAGAATCCGGGAATGTCGGCGTACAGCGACGCCGTGACGCCGGGAAAGTTCGACAACCTGTACTACCAGAATCTGCTGAGAGGAATGGGACTCTCGGTGTCCGATCACGCGCTGGTGAAGGATCCGAGGACGAAGAAGTTCGTGGAGATGTACGCCGGAAACCAGGCATTGTTCTTCAAGGATTTCGCACAGGCCATGGAGAAGATGAGCGTTCGTGAGGTGAAAACTGGTGGGAAAGGAGAAGTGAGGAGGAGATGCGATGTGTTCAATTCAATCCAAGCTTGA 645 52.09 MAFFPPAAFLFATRDLVTIAGGPSYNVPLGREDSLVSKSSSVEGNVPKADQSIDEMIKLFTAKGFTIQEMVALYGGRTIGFSNCKEFSERIFNFSKTAPTDPEIHPKFAEALKKTCAGYEKNPGMSAYSDAVTPGKFDNLYYQNLLRGMGLSVSDHALVKDPRTKKFVEMYAGNQALFFKDFAQAMEKMSVREVKTGGKGEVRRRCDVFNSIQA 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5376375 5377367 - Maker00022340 Lcy2g0627 625392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0627 214 PRINTS Plant peroxidase signature 21 36 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Plant peroxidase signature 68 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Plant peroxidase signature 184 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Plant peroxidase signature 128 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Plant peroxidase signature 144 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 SUPERFAMILY Heme-dependent peroxidases 10 210 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 Gene3D - 11 210 - -
Lcy2g0627 214 ProSiteProfiles Plant heme peroxidase family profile. 11 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PANTHER - 10 210 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Haem peroxidase superfamily signature 69 84 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 PRINTS Haem peroxidase superfamily signature 21 33 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 FunFam Peroxidase 47 189 - -
Lcy2g0627 214 Pfam Peroxidase 10 174 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy2g0627 214 Gene3D Peroxidase, domain 2 47 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0627 Lcy-Chr2:5376375 Lcy7g1962 Lcy-Chr7:46171679 3.02E-70 dispersed
Lcy2g0627 Lcy-Chr2:5376375 Lcy5g2246 Lcy-Chr5:45418386 6.74E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0627 K00430 - csv:101213178 362.073