Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0629 ATGCAAGAGCTATTGGAGCCACTCATTCGTAAAGTGGTAAGGGAGGAGGTTGAATCGGCACTTAGAAAATACATTACCAATGTGCCAAGGAATGATGAAAATGATGCAAAAGAAATCTATTCTTCTGGGCCAAGATGCTTTCAATTGAAGTTCGTAACTGATATGTCTCTCCCGGTATTTACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGATGGTGGCTTTGATTGACACCCTAAATGGGGAAATTGTTGACACTGGGCCTCAGTCCTCGTCCAAAGTGGAAATTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAGGTGATAATCACACTATAGAGGAGTTTAAGAATAACATTGTAAGGGAGAGGGAAGGAAAGAAACCACTTCTTACAGGAGATACATTTGTGAATCTCAAAGAGGGCATTGGTGTAGTAGGTGAGATTTCTTTCACTGATAATTCAAGCTGGACTAGAAGCCGTCGGTTCAGGCTGGGTGCAAGAATTATAGATGACACGGATGGAACGAGAGTACTAGAAGCAAAGACTACTTCATTTGTGGTCAGGGATCACCGCGGAGAATTGTACAAGAAGCACCACCCTCCATCTCTGCAAGATGAAGTATGGAGATTGCAGAAAATTAGCAAAGAAGGAGCCTATCATAAGCGCCTGAGCCAAGAGAAAATCAAGACGGTGCAAGATTTCCTAACTCATCTTCATGTACAACCTTCAAGGCTTCCTATAATTGAGCATGCTCAGACATGTGTGCTCGATAAGAAGATTTACTTGTACAAACCTCATGATGTGGAACAGAAAAGCGGAGCTGATGCTCACAACTTGGTTATCTCCGCATACAAACACTGGGAAGACGTGGACTCTATTGATGATGAAACTTCTCTTGTAGGTGGTTCCTCTACTCAGCCAGTTAGTTTCCTTTACACCCCGAGCTCACCAATGGAGGACCATTCTTATGGTAGCAAGTACTTGGGTTCTATTGGGAGTGCGAGTGGCTTTGATTTTACGCCATCAAATGCCTATTCGTCTGACATAATCTCATCGATGGGTTCTATTGGGAGTGCGAGTGGCTTGGACGATCATGCTTTGCAGGGTTTTGAATCTATGGTTGTAAGATATGATCAGATTCCAAGTTCCCTAAACTTTGCCAACTCTTTGATCTGTGATTCTGAGCCACTAAATTCATCTTTCTATGGCGTGGATCATCTGCAAGTTTTAGAGCCTGATTTGCAATGTAGCTCGATTTTAGAATCACGAGCTACTCTTCAAGGTGGCTCCCCGTCATGTATTGCTCAAATTAGATGGACTAAGGTTTATGGCGTGCTAAAATGGTACTCTTTGTGGAGATTGGTAATTAGGAGGAACAAACACGGATACGAGAGATACAACAAAGGTGCCATGGGTCGTGGAAAGGAAAAGTTGGACTACGGCTGA 1452 43.46 MQELLEPLIRKVVREEVESALRKYITNVPRNDENDAKEIYSSGPRCFQLKFVTDMSLPVFTGARIEGRDGSNLMVALIDTLNGEIVDTGPQSSSKVEIVVLEGDFEGGGDNHTIEEFKNNIVREREGKKPLLTGDTFVNLKEGIGVVGEISFTDNSSWTRSRRFRLGARIIDDTDGTRVLEAKTTSFVVRDHRGELYKKHHPPSLQDEVWRLQKISKEGAYHKRLSQEKIKTVQDFLTHLHVQPSRLPIIEHAQTCVLDKKIYLYKPHDVEQKSGADAHNLVISAYKHWEDVDSIDDETSLVGGSSTQPVSFLYTPSSPMEDHSYGSKYLGSIGSASGFDFTPSNAYSSDIISSMGSIGSASGLDDHALQGFESMVVRYDQIPSSLNFANSLICDSEPLNSSFYGVDHLQVLEPDLQCSSILESRATLQGGSPSCIAQIRWTKVYGVLKWYSLWRLVIRRNKHGYERYNKGAMGRGKEKLDYG 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5389027 5397547 + Maker00021752 Lcy2g0629 625394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0629 483 Pfam Calmodulin binding protein-like N-terminal domain 47 192 IPR046831 -
Lcy2g0629 483 Pfam Calmodulin binding protein central domain 205 248 IPR046830 -
Lcy2g0629 483 PANTHER OS02G0177800 PROTEIN 4 336 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0629 Lcy-Chr2:5389027 Lcy5g2411 Lcy-Chr5:46914079 1.16E-69 dispersed
Lcy2g0629 Lcy-Chr2:5389027 Lcy2g2242 Lcy-Chr2:46589266 5.24E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0629 - - - 0.0