Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0645 | ATGCTGTCAAGTTCTTGCTTGAGTTTATTAGAGTTATCATCTGCTGATATGTTGGATTTTCCCCTTACACCAAGAACTGTTCCACGGGTGATGACGGCATCGGGAATATTTTCCGACAAGGACAGGGATTCAGAAGTTTCCCCGTCTAAATGCCGAGGGAGGAAAATAATAGTGGCGAATTTTCTTCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGATTCTGCTTCAGCTGAAGGATGGATTCTCATCAGATGTAGAGGTTATATATGTTGGATCGTTAAAGGTTGATGTCGATATCCGAGAGCAAGATGAGATTTCTCAGAAACTACTAGAGGAATTCAACTGTGCACCGACTTTCATCCCTACATCCCTCCAGAAACAGTTCTATCATGGATTCTGCAAACAACATTTGTGGCCTCTTTTTCATTACATGATGCCAATTTCCCCTTATCATGGCTCTCGTTTTGATCGAGGTCTTTGGCAAGCGTATCTTTCAGCAAACAAAAGGTTTGCTGATAAAGTTATGGAGGTAATCAATCTGGAAGAAGACTATGTCTGGGTTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGATTTTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTACCGAACTCTGCCTGTCAGAGATGAGATTCTAAAAGCATTACTAAACGCAGACATAATTGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGAGGCTATCTCACGCTTGAATATTTTGGCCGTACAATATACATCAAGATCTTGCCTGTTGGAGTTCATATGGGTCGTCTTGAATTTGCATTAAATCAACCCCACACTTCAATCAAGGCCAAGGAGATCAAAGAAAATCTCAAAGGAAAGAAGCTTATTCTCGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTGTTGGCAATGGAACAGCTCTTGAACCAGCATCCGGAGTTACAGGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTCCTGGAAGCAAAAAGGGAAACTTATGAGATAACCAAAAGGATTAACGAGACTTTCGGTTTTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGTATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAATACATTGTTTGTCGACAGGGAACTTCACAAATGGATGAAGTCTTGGAAGTCTCCCCAAATTCACCTCGTACCAGCACGCTTGTCGTGTCGGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCGATCAGGGTAAACCCCTGGGATTTTGATGCTGTAGCTGATGCACTTCATGTGGCTGTCACAATGCCTGCTTTGGAGAAGCAACTGAGGCACGAAAAGCATTACCGATATGTTAGCTCTCACAATGTTGCTTATTGGGCTCGCAGTTTCTCGCAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGTTGCTGGGGCATTGGACTTGGTTTAAGCTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGCGCTTCTAGGAGGGCCATATTTTTGGATTACGACGGGACTGTGGTTTCCCAAGCTTCGTTGGTCAAAACCCCATCACCTGAAGTCATTTCTATCCTCAACAACCTTTGCACAGATTCAAACAACACCGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCTTGGTTCGATTCGTGTAAGAATCTCGGAATTGCTGCTGAACATGGATACTACTTAAGGTGGAATAGAGACTCGGAGTGGGAAGTCAGTACATTAGCTGAAAACTTTGGTTGGAAAAGTATTGCAGAACCTGTGATGCAACTATATACCGAGGCAACCGATGGCTCATCCATAGAGCCTAAGGACAGTGCCTTGGTATGGCACCATCAAGACGCCGATCCTTATTTCGGTTCATGCCAGGCCATGGAGCTCTTAGATCACCTCGAAAATGTTCTTGCTAATGAACCCGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATAAGCTCTGATAAAGCACCCGACTTCGTGATGTGCATTGGAGACGATCGATCCGACGAAGACATGTTCGAGAGCATATTGAGTAAAAGCTATAGCTCATCTCTTGCTGCTGCTCCTAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACTGCCGATGTTTTGACCTTGCTTCAAAGCCTAGCCGGCTCTACTAGCCGTAAATCGAGGTCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGTTTGA | 2568 | 42.99 | MLSSSCLSLLELSSADMLDFPLTPRTVPRVMTASGIFSDKDRDSEVSPSKCRGRKIIVANFLPLHAKKDPDSGKWNFSFDEDSILLQLKDGFSSDVEVIYVGSLKVDVDIREQDEISQKLLEEFNCAPTFIPTSLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRGLWQAYLSANKRFADKVMEVINLEEDYVWVHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILKALLNADIIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALNQPHTSIKAKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLNQHPELQGNVVLVQILNPARSNGNDVLEAKRETYEITKRINETFGFPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQMDEVLEVSPNSPRTSTLVVSEFIGCSPSLSGAIRVNPWDFDAVADALHVAVTMPALEKQLRHEKHYRYVSSHNVAYWARSFSQDLERACREHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKTPSPEVISILNNLCTDSNNTVFIVSGRGKDSLGSWFDSCKNLGIAAEHGYYLRWNRDSEWEVSTLAENFGWKSIAEPVMQLYTEATDGSSIEPKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMISSDKAPDFVMCIGDDRSDEDMFESILSKSYSSSLAAAPKIFACTVGQKPSKAKYYLDDTADVLTLLQSLAGSTSRKSRSSFETRVLFEDDV | 855 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5493497 | 5498174 | - | Maker00022064 | Lcy2g0645 | 625410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0645 | 855 | CDD | HAD_TPP | 587 | 826 | - | - | |
Lcy2g0645 | 855 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 585 | 702 | - | - | |
Lcy2g0645 | 855 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 47 | 306 | - | - | |
Lcy2g0645 | 855 | CDD | GT20_TPS | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy2g0645 | 855 | Gene3D | - | 715 | 848 | IPR023214 | - | |
Lcy2g0645 | 855 | Gene3D | - | 585 | 691 | IPR023214 | - | |
Lcy2g0645 | 855 | Gene3D | Glycogen Phosphorylase B; | 48 | 306 | - | - | |
Lcy2g0645 | 855 | NCBIfam | HAD-IIB family hydrolase | 587 | 787 | IPR006379 | - | |
Lcy2g0645 | 855 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 25 | 834 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Lcy2g0645 | 855 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 715 | 846 | - | - | |
Lcy2g0645 | 855 | Gene3D | Glycogen Phosphorylase B; | 307 | 523 | - | - | |
Lcy2g0645 | 855 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 54 | 543 | - | - | |
Lcy2g0645 | 855 | Pfam | Trehalose-phosphatase | 589 | 823 | IPR003337 | GO:0005992(InterPro) | |
Lcy2g0645 | 855 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 308 | 523 | - | - | |
Lcy2g0645 | 855 | NCBIfam | trehalose-phosphatase | 583 | 834 | IPR003337 | GO:0005992(InterPro) | |
Lcy2g0645 | 855 | Pfam | Glycosyltransferase family 20 | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy2g0645 | 855 | SUPERFAMILY | HAD-like | 586 | 834 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0645 | Lcy-Chr2:5493497 | Lcy6g2240 | Lcy-Chr6:46976806 | 0 | dispersed | |
Lcy2g0645 | Lcy-Chr2:5493497 | Lcy7g0196 | Lcy-Chr7:1718723 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0645 | K16055 | - | csv:101209676 | 1600.88 |