Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0645 ATGCTGTCAAGTTCTTGCTTGAGTTTATTAGAGTTATCATCTGCTGATATGTTGGATTTTCCCCTTACACCAAGAACTGTTCCACGGGTGATGACGGCATCGGGAATATTTTCCGACAAGGACAGGGATTCAGAAGTTTCCCCGTCTAAATGCCGAGGGAGGAAAATAATAGTGGCGAATTTTCTTCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGATTCTGCTTCAGCTGAAGGATGGATTCTCATCAGATGTAGAGGTTATATATGTTGGATCGTTAAAGGTTGATGTCGATATCCGAGAGCAAGATGAGATTTCTCAGAAACTACTAGAGGAATTCAACTGTGCACCGACTTTCATCCCTACATCCCTCCAGAAACAGTTCTATCATGGATTCTGCAAACAACATTTGTGGCCTCTTTTTCATTACATGATGCCAATTTCCCCTTATCATGGCTCTCGTTTTGATCGAGGTCTTTGGCAAGCGTATCTTTCAGCAAACAAAAGGTTTGCTGATAAAGTTATGGAGGTAATCAATCTGGAAGAAGACTATGTCTGGGTTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGATTTTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTACCGAACTCTGCCTGTCAGAGATGAGATTCTAAAAGCATTACTAAACGCAGACATAATTGGTTTCCATACATTCGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGAGGCTATCTCACGCTTGAATATTTTGGCCGTACAATATACATCAAGATCTTGCCTGTTGGAGTTCATATGGGTCGTCTTGAATTTGCATTAAATCAACCCCACACTTCAATCAAGGCCAAGGAGATCAAAGAAAATCTCAAAGGAAAGAAGCTTATTCTCGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTGTTGGCAATGGAACAGCTCTTGAACCAGCATCCGGAGTTACAGGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTCCTGGAAGCAAAAAGGGAAACTTATGAGATAACCAAAAGGATTAACGAGACTTTCGGTTTTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGTATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAATACATTGTTTGTCGACAGGGAACTTCACAAATGGATGAAGTCTTGGAAGTCTCCCCAAATTCACCTCGTACCAGCACGCTTGTCGTGTCGGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCGATCAGGGTAAACCCCTGGGATTTTGATGCTGTAGCTGATGCACTTCATGTGGCTGTCACAATGCCTGCTTTGGAGAAGCAACTGAGGCACGAAAAGCATTACCGATATGTTAGCTCTCACAATGTTGCTTATTGGGCTCGCAGTTTCTCGCAAGATTTGGAGCGAGCATGCCGAGAACACTACAGTAAACGTTGCTGGGGCATTGGACTTGGTTTAAGCTTCAGAATTTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGCGCTTCTAGGAGGGCCATATTTTTGGATTACGACGGGACTGTGGTTTCCCAAGCTTCGTTGGTCAAAACCCCATCACCTGAAGTCATTTCTATCCTCAACAACCTTTGCACAGATTCAAACAACACCGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCTTGGTTCGATTCGTGTAAGAATCTCGGAATTGCTGCTGAACATGGATACTACTTAAGGTGGAATAGAGACTCGGAGTGGGAAGTCAGTACATTAGCTGAAAACTTTGGTTGGAAAAGTATTGCAGAACCTGTGATGCAACTATATACCGAGGCAACCGATGGCTCATCCATAGAGCCTAAGGACAGTGCCTTGGTATGGCACCATCAAGACGCCGATCCTTATTTCGGTTCATGCCAGGCCATGGAGCTCTTAGATCACCTCGAAAATGTTCTTGCTAATGAACCCGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATAAGCTCTGATAAAGCACCCGACTTCGTGATGTGCATTGGAGACGATCGATCCGACGAAGACATGTTCGAGAGCATATTGAGTAAAAGCTATAGCTCATCTCTTGCTGCTGCTCCTAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACTGCCGATGTTTTGACCTTGCTTCAAAGCCTAGCCGGCTCTACTAGCCGTAAATCGAGGTCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGTTTGA 2568 42.99 MLSSSCLSLLELSSADMLDFPLTPRTVPRVMTASGIFSDKDRDSEVSPSKCRGRKIIVANFLPLHAKKDPDSGKWNFSFDEDSILLQLKDGFSSDVEVIYVGSLKVDVDIREQDEISQKLLEEFNCAPTFIPTSLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRGLWQAYLSANKRFADKVMEVINLEEDYVWVHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILKALLNADIIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALNQPHTSIKAKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLNQHPELQGNVVLVQILNPARSNGNDVLEAKRETYEITKRINETFGFPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQMDEVLEVSPNSPRTSTLVVSEFIGCSPSLSGAIRVNPWDFDAVADALHVAVTMPALEKQLRHEKHYRYVSSHNVAYWARSFSQDLERACREHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKTPSPEVISILNNLCTDSNNTVFIVSGRGKDSLGSWFDSCKNLGIAAEHGYYLRWNRDSEWEVSTLAENFGWKSIAEPVMQLYTEATDGSSIEPKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMISSDKAPDFVMCIGDDRSDEDMFESILSKSYSSSLAAAPKIFACTVGQKPSKAKYYLDDTADVLTLLQSLAGSTSRKSRSSFETRVLFEDDV 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5493497 5498174 - Maker00022064 Lcy2g0645 625410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0645 855 CDD HAD_TPP 587 826 - -
Lcy2g0645 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Lcy2g0645 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Lcy2g0645 855 CDD GT20_TPS 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy2g0645 855 Gene3D - 715 848 IPR023214 -
Lcy2g0645 855 Gene3D - 585 691 IPR023214 -
Lcy2g0645 855 Gene3D Glycogen Phosphorylase B; 48 306 - -
Lcy2g0645 855 NCBIfam HAD-IIB family hydrolase 587 787 IPR006379 -
Lcy2g0645 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 25 834 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy2g0645 855 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 846 - -
Lcy2g0645 855 Gene3D Glycogen Phosphorylase B; 307 523 - -
Lcy2g0645 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Lcy2g0645 855 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0005992(InterPro)
Lcy2g0645 855 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Lcy2g0645 855 NCBIfam trehalose-phosphatase 583 834 IPR003337 GO:0005992(InterPro)
Lcy2g0645 855 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy2g0645 855 SUPERFAMILY HAD-like 586 834 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0645 Lcy-Chr2:5493497 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy2g0645 Lcy-Chr2:5493497 Lcy7g0196 Lcy-Chr7:1718723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0645 K16055 - csv:101209676 1600.88