Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0647 ATGCATAACATTGCTTATTCTCGATTGGGCGGCCTTCAAAAATCCCTTTCTCTGTACCGGAAAGTGCCTTGGTGGGATCAAATTCTCGAACCAGATTCCGATTTCGTCATCCGATGGAATCGCATCTTCCTCGTCACTTGCTTGATCGCGCTCTTCGTCGATCCTCTCTACTTTTATGTCTCTGTCATCGGCGGGCCTGCTTGTATGCGATTCCACATCGAACTTTGCATCGTCGTCACTTTCTTCCGCTCCGTCGTCGATTTGTTCTCCCTCTTTCATATACTTATGAAGTTTCGCACCGCCTTCGTTGCGCCCAATTCTAGGGTTTTTGGCCGTGGGGAGCTTGTTAAGGAGCCTAGGGATATTGCTATGCGCTACCTCAAGAAGGATTTTGTCATCGATCTTGCCGCTACGCTTCCCCTGCCTCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCAACAGCGACCCACGCTAACCACACCCTTGCTCTGATTGTGCTCATTCAATATGCTCCCCGACTGTTTGTTATATTTCCTCTGAACCGACAGATCAATAAGACCACAGGAGCGATAGCCAAAACTGCGTGGGCTGGTGCAGCTTATAATCTCCTACTCTATTTGCTTGCTAGCCATGTTATAGGATCTGCATGGTATGTGGCATCCATTCAGCGCCAGGATGAGTGTTGGAAGTTACAATGTAGAAAGGAGATGAATACGACACATTCTCCTTCTTGCAGCCCCCTTTTTCTGGACTGTGAAAGTTTGAATGATCCAGAACGACAAGCTTGGCTGAGAGTTACTAGTGTTCTTACGAACTGTGATACGCTAAATGATGAAAAGAGTTTTGAGTTTGGGATGTTTGCTGATGCGTTTACTGATGAAGTTGCTTCAGCAAACTTTTTCGAGAAGTACTTCTACTGCCTTTGGTGGGGTTTGAAGAGTTTGAGTGCATATGGACAAAATTTAACGACGAGCACTTATGTTGGTGAAATTTTATTTAGCATTTTGATTTGCTCAGCGGGGTTGGTCCTCTTCTCGCACCTCATCGGACAAGTGCAGAGCTATCTGCAATCCACGACTGCTAGACTTGAGCAATGGAGAGTAAAACGAAGGGACACAGAGGAATGGATGACGCATCGACAATTACCTCTTCATTTGCAAGAGCGTGTTCGTCGATTCGTTCAATATAAATGGATTGCAACCCGAGGTGTAGACGAAGAATCGATCTTGCGCTCTTTACCTTTGGATCTTCGACGTCAAATTCAGAGACATCTTTCTCTTGCACTTGTTCGCCGTGTAAGTCCTCTTCAAAGTGCCTGTCTTCTTACTCAGTTTCTATTTCCAATAACACTCATGATGCTTCAATCCCTCCCACTTAGAAGATTGTTCTGTTCCCATTCTTCTCAGGTTCCTTTTTTTGCACAAATGGATGCTCAGCTATTGGACGCCATATGCGAGCGTCTAGTCTCATCCTTGAACACTAAAGACACATTCATAACAAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGCCAACTAGAGAGCTCCACAACAAATGGGGGCAGGTCAGGATTCTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAGCTACTAACATGGGCCTTAGTCCCATCCCCAAGCCTAAGCTTTCCGTCCTCAACGCGAACGGTGAAGTCGCTCACCGAAGTCGAGGCATTCGCACTTCGAGCAGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTGCAGCATGCTTTCAGATACTATTCCCACCAATGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGCTAGCTATGGAGTTGGCAAGACAAGAGGAGCTCTTTTACACAACCATCTTGGACCAAGAACAGAGCCATGGCAGTGAAATGGAAGACCAAGAAGATGGTCAAACCAGTGGCTCCAAACCTAAAATTGCAAACAAACCCAAACATCTTGGAATAACAATGTTGGCTTCAAAGTTTGCAGCAAACACAAGAAGAGGGATTCACCAGAAGTTGTCTGCGCTTGAATCTGATGCCACCAGCTTGAAAATGCCCAAGCTGTTTAAGCCTGATGAACCAGACTTCTCTGCTTTCCAACATGGAAAAGAGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTTCACACCGGTGTGGTGCTCGCCACACCAGCTCCGATGCTTAAGTCAGCAAGCAGAACGGTGGGGAGCGGAAAAGATTCGGAGGCATTTCGGGACAATCCAAGCGAAACCGGGGCGACTAGAGGCTACAGGGGTCGAACGGAGTCAGAGGGACTCGGCCTTGGTCCATGGCCGAGGCCGACCATGGGGTCGGGCCAAAAGCCCGACCCCTTTGGTCTCGGCCAGACCCACTGGCTCGTTTCGCCCCTAGGGTCCATTCTCCAGTCTGATTTCTGCCCGGTTGTCTTCGTCAGCTCCTTGTGCACCGAGGTGGTCCAAAATCACCTATAA 2550 47.92 MHNIAYSRLGGLQKSLSLYRKVPWWDQILEPDSDFVIRWNRIFLVTCLIALFVDPLYFYVSVIGGPACMRFHIELCIVVTFFRSVVDLFSLFHILMKFRTAFVAPNSRVFGRGELVKEPRDIAMRYLKKDFVIDLAATLPLPQIVIWFVIPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGSAWYVASIQRQDECWKLQCRKEMNTTHSPSCSPLFLDCESLNDPERQAWLRVTSVLTNCDTLNDEKSFEFGMFADAFTDEVASANFFEKYFYCLWWGLKSLSAYGQNLTTSTYVGEILFSILICSAGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMTHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVSPLQSACLLTQFLFPITLMMLQSLPLRRLFCSHSSQVPFFAQMDAQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELFYTTILDQEQSHGSEMEDQEDGQTSGSKPKIANKPKHLGITMLASKFAANTRRGIHQKLSALESDATSLKMPKLFKPDEPDFSAFQHGKEGEDVACKTVNLHTGVVLATPAPMLKSASRTVGSGKDSEAFRDNPSETGATRGYRGRTESEGLGLGPWPRPTMGSGQKPDPFGLGQTHWLVSPLGSILQSDFCPVVFVSSLCTEVVQNHL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5522638 5528265 + Maker00022837 Lcy2g0647 625412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0647 849 MobiDBLite consensus disorder prediction 651 675 - -
Lcy2g0647 849 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
Lcy2g0647 849 CDD CAP_ED 475 606 IPR000595 -
Lcy2g0647 849 SMART cnmp_10 475 606 IPR000595 -
Lcy2g0647 849 SUPERFAMILY cAMP-binding domain-like 471 593 IPR018490 -
Lcy2g0647 849 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Lcy2g0647 849 Gene3D - 41 362 - -
Lcy2g0647 849 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g0647 849 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 700 - -
Lcy2g0647 849 Gene3D Jelly Rolls 473 593 IPR014710 -
Lcy2g0647 849 Gene3D Helix hairpin bin 364 428 - -
Lcy2g0647 849 MobiDBLite consensus disorder prediction 756 807 - -
Lcy2g0647 849 Pfam Cyclic nucleotide-binding domain 498 586 IPR000595 -
Lcy2g0647 849 ProSiteProfiles cAMP/cGMP binding motif profile. 475 605 IPR000595 -
Lcy2g0647 849 SUPERFAMILY cAMP-binding domain-like 367 441 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0622 Lcy-Chr11:15924765 Lcy2g0647 Lcy-Chr2:5522638 2.99E-21 dispersed
Lcy2g0647 Lcy-Chr2:5522638 Lcy9g1763 Lcy-Chr9:42827391 4.19E-276 dispersed
Lcy2g0647 Lcy-Chr2:5522638 Lcy10g0256 Lcy-Chr10:4165205 2.34E-300 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0647 K05391 - csv:101209760 1190.64