Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0648 ATGGCCGCTCGTAGAGGAATCTCTTCTTTGCTCTCTCGCTCTCTCTTTTCATCATCATCATCTTCTTCTTCTTCTTCTGGTCATGGGTTTTGTTCTCTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCATGGAAGAGGGAACAGATTCAGCACATCTGCTTTGGCAGAGGAGGAACTTGTCACTCCTCCTGTTAAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTTGATGCTGTGTCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGAGGAAGTGATTGCTCATGTCGCCGAGGGCGAGGCTGAGGATGTCAACCGGGCGGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGCCATGGCCAAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTTGCGGATTTGGTTGAGAAACATAGCACTGAACTTGCAGCATTGGAGACATGGAACAATGGGAAACCTTACGAACAATCGCTTAAAACAGAAGTACCAGTAATCGTGCGCTTGTTTCACTATTACGCCGGCTGGGCAGACAAAATTCATGGCTTAACAGTTCCAGCTGATGGGAACCATCATGTGCAAGTACTACATGAACCAATTGGAGTTGCTGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACCGCAGAGCAAACACCCCTCACTGCTCTTTACGCCGCAAAGTTATTCCACGAGGCCGGTCTGCCTCCAGGCGTTTTGAATGTCGTTTCGGGCTATGGTCCAACGGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACAGGATCAACAAGCACAGGAAAAGTTGTGCTTGAATTGGCAGCTAAAAGCAATTTGAAGCCAGTAACACTAGAGCTCGGAGGAAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTCGATAAGGCCGTGGAACTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTTGTGCATGAGCGCGTATACGACGAATTTGTCGAGAAATCGAGGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGAGGGGATAGACTTGGGTCCAAGGGATACTTTATCCAGCCAACAGTTTTCTCAAATGTCAAGGACGATATGTTGATAGCCAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCAACTCGTTACGGTCTAGCTGCCGGAGTTTTCACTACGAACATCGACACGGCGAACACCATAACACGAGGATTGAGAACCGGGACCGTGTGGATCAATTGCTTCGACGTATTTGACGCTGCAATACCGTTTGGCGGGTATAAGATGAGCGGAATGGGAAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTGGTTACTCCATTGAAGAATCCAGCATGGTTGTGA 1653 47.19 MAARRGISSLLSRSLFSSSSSSSSSSGHGFCSLLQSHGRVSRFHGRGNRFSTSALAEEELVTPPVKISYTQNLINGQFVDAVSGKTFPTYDPRTEEVIAHVAEGEAEDVNRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSLKTEVPVIVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGDRLGSKGYFIQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLAAGVFTTNIDTANTITRGLRTGTVWINCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5532930 5536199 + Maker00022535 Lcy2g0648 625413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0648 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 322 511 IPR016163 GO:0016620(InterPro)
Lcy2g0648 550 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 57 542 - GO:0004029(PANTHER)
Lcy2g0648 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 84 540 IPR016162 GO:0016491(InterPro)
Lcy2g0648 550 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 316 323 IPR029510 GO:0016491(InterPro)
Lcy2g0648 550 Pfam Aldehyde dehydrogenase family 79 540 IPR015590 GO:0016491(InterPro)
Lcy2g0648 550 FunFam Aldehyde dehydrogenase, putative 512 538 - -
Lcy2g0648 550 SUPERFAMILY ALDH-like 66 544 IPR016161 GO:0016491(InterPro)
Lcy2g0648 550 FunFam Mitochondrial aldehyde dehydrogenase 2 322 511 - -
Lcy2g0648 550 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 74 334 - -
Lcy2g0648 550 CDD ALDH_F2BC 67 542 - -
Lcy2g0648 550 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 344 355 IPR016160 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0624 Lcy-Chr2:5328987 Lcy2g0648 Lcy-Chr2:5532930 1.42E-119 dispersed
Lcy2g0648 Lcy-Chr2:5532930 Lcy2g0806 Lcy-Chr2:7247642 5.02E-188 dispersed
Lcy2g0648 Lcy-Chr2:5532930 Lcy13g1208 Lcy-Chr13:28743166 4.85e-319 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0648 K00128 - csv:101209430 998.423