Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0648 | ATGGCCGCTCGTAGAGGAATCTCTTCTTTGCTCTCTCGCTCTCTCTTTTCATCATCATCATCTTCTTCTTCTTCTTCTGGTCATGGGTTTTGTTCTCTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCATGGAAGAGGGAACAGATTCAGCACATCTGCTTTGGCAGAGGAGGAACTTGTCACTCCTCCTGTTAAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTTGATGCTGTGTCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGAGGAAGTGATTGCTCATGTCGCCGAGGGCGAGGCTGAGGATGTCAACCGGGCGGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGCCATGGCCAAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTTGCGGATTTGGTTGAGAAACATAGCACTGAACTTGCAGCATTGGAGACATGGAACAATGGGAAACCTTACGAACAATCGCTTAAAACAGAAGTACCAGTAATCGTGCGCTTGTTTCACTATTACGCCGGCTGGGCAGACAAAATTCATGGCTTAACAGTTCCAGCTGATGGGAACCATCATGTGCAAGTACTACATGAACCAATTGGAGTTGCTGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACCGCAGAGCAAACACCCCTCACTGCTCTTTACGCCGCAAAGTTATTCCACGAGGCCGGTCTGCCTCCAGGCGTTTTGAATGTCGTTTCGGGCTATGGTCCAACGGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACAGGATCAACAAGCACAGGAAAAGTTGTGCTTGAATTGGCAGCTAAAAGCAATTTGAAGCCAGTAACACTAGAGCTCGGAGGAAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTCGATAAGGCCGTGGAACTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTTGTGCATGAGCGCGTATACGACGAATTTGTCGAGAAATCGAGGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGAGGGGATAGACTTGGGTCCAAGGGATACTTTATCCAGCCAACAGTTTTCTCAAATGTCAAGGACGATATGTTGATAGCCAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCAACTCGTTACGGTCTAGCTGCCGGAGTTTTCACTACGAACATCGACACGGCGAACACCATAACACGAGGATTGAGAACCGGGACCGTGTGGATCAATTGCTTCGACGTATTTGACGCTGCAATACCGTTTGGCGGGTATAAGATGAGCGGAATGGGAAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTGGTTACTCCATTGAAGAATCCAGCATGGTTGTGA | 1653 | 47.19 | MAARRGISSLLSRSLFSSSSSSSSSSGHGFCSLLQSHGRVSRFHGRGNRFSTSALAEEELVTPPVKISYTQNLINGQFVDAVSGKTFPTYDPRTEEVIAHVAEGEAEDVNRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSLKTEVPVIVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGDRLGSKGYFIQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLAAGVFTTNIDTANTITRGLRTGTVWINCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL | 550 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5532930 | 5536199 | + | Maker00022535 | Lcy2g0648 | 625413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0648 | 550 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 322 | 511 | IPR016163 | GO:0016620(InterPro) | |
Lcy2g0648 | 550 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 57 | 542 | - | GO:0004029(PANTHER) | |
Lcy2g0648 | 550 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 84 | 540 | IPR016162 | GO:0016491(InterPro) | |
Lcy2g0648 | 550 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 316 | 323 | IPR029510 | GO:0016491(InterPro) | |
Lcy2g0648 | 550 | Pfam | Aldehyde dehydrogenase family | 79 | 540 | IPR015590 | GO:0016491(InterPro) | |
Lcy2g0648 | 550 | FunFam | Aldehyde dehydrogenase, putative | 512 | 538 | - | - | |
Lcy2g0648 | 550 | SUPERFAMILY | ALDH-like | 66 | 544 | IPR016161 | GO:0016491(InterPro) | |
Lcy2g0648 | 550 | FunFam | Mitochondrial aldehyde dehydrogenase 2 | 322 | 511 | - | - | |
Lcy2g0648 | 550 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 74 | 334 | - | - | |
Lcy2g0648 | 550 | CDD | ALDH_F2BC | 67 | 542 | - | - | |
Lcy2g0648 | 550 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 344 | 355 | IPR016160 | GO:0016491(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0624 | Lcy-Chr2:5328987 | Lcy2g0648 | Lcy-Chr2:5532930 | 1.42E-119 | dispersed | |
Lcy2g0648 | Lcy-Chr2:5532930 | Lcy2g0806 | Lcy-Chr2:7247642 | 5.02E-188 | dispersed | |
Lcy2g0648 | Lcy-Chr2:5532930 | Lcy13g1208 | Lcy-Chr13:28743166 | 4.85e-319 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0648 | K00128 | - | csv:101209430 | 998.423 |