Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0649 ATGAAGGAGAACAATGATGGGTTTGTGCGGGCGGATCAGATTGATCTGAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTTAGCAGAGCCTTGACGATGGAGAAGAACAAGAAGAAAGATGAAGATGGAAATAGCTTTCTCACTTCCGCAGCCATCGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGAGCGGCAGGAGTGGGAGATCGATCCGTCTAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTTGGCACCGTCCATCGCGGCGTTTACGATGGACTCGATGTCGCCGTTGTTTGCTTCCGTTCACTGAAGTTTTCTGTTGGCTTTTTTAATGCACTAGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCAGCTTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGGGCAACAATGGGCTCAGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGCTGTGTTGTGGTGGAATATCTTGCCGGAGGTGCCCTTAAAACTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGTTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTCGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGATGTGTACAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACGTCCGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTAATGAAGCGTTGCTGGGATGCGACCCCGGACAAGCGGCCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA 1188 47.05 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGNSFLTSAAIARSRSTKVAAKERQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVVCFRSLKFSVGFFNALVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKTYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5539066 5543150 - Maker00022811 Lcy2g0649 625414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0649 395 FunFam Serine/threonine-protein kinase HT1 192 377 - -
Lcy2g0649 395 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 367 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lcy2g0649 395 PRINTS Tyrosine kinase catalytic domain signature 189 202 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 PRINTS Tyrosine kinase catalytic domain signature 227 245 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 PRINTS Tyrosine kinase catalytic domain signature 293 315 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 Gene3D Phosphorylase Kinase; domain 1 63 175 - -
Lcy2g0649 395 Coils Coil 16 36 - -
Lcy2g0649 395 Gene3D Transferase(Phosphotransferase) domain 1 193 382 - -
Lcy2g0649 395 ProSiteProfiles Protein kinase domain profile. 75 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 SMART serkin_6 75 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0649 395 CDD STKc_MAP3K-like 81 366 - -
Lcy2g0649 395 SUPERFAMILY Protein kinase-like (PK-like) 59 366 IPR011009 -
Lcy2g0649 395 Pfam Protein tyrosine and serine/threonine kinase 77 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1570 Lcy-Chr11:39503487 Lcy2g0649 Lcy-Chr2:5539066 1.15E-182 dispersed
Lcy2g0649 Lcy-Chr2:5539066 Lcy3g1584 Lcy-Chr3:42991060 2.14E-181 dispersed
Lcy2g0649 Lcy-Chr2:5539066 Lcy10g0222 Lcy-Chr10:3512089 1.62E-235 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65721 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0649 - - - 0.0