Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0651 ATGATCTTACGAGAACTAGCTCTTGTTCTCGTGATTGTTTCCGATTCATTGCCATCAAATTCGATCAGGCTTCTGCACCGTCCGTATGGCGCTCGAGTGAATTTGCTCTCTAAGTTTTGCTTTGGCATTAAGAGTTGGAAATCAAACCTAATCATATCATATGCTTTGAAATCTCGAGCTATGTTTTTGATTTGTGTATCTTCTTTAACCATTTTGCTCGATAGAGTAATAGTTTCGATCAATTGGAAGAAGTATCATACTTGTGTACATCCTTTGCATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTTCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGACAGAAATGGGGATTCCTAATTTGGTTACTTTTCAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGACAAGAAACAAGGGTAATGAGCCAAGATGCTGCTACATACCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCCGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATCGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGTTCAGTCTTCCCAAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGGCCATCCGCAAGTGTTGTCACGGCCAATCGTTATGTGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGGTTGCAGGGTCTGCTTCGACCTGTTCGCACGGAAAATATTGGTGCACACAGTGATTTAGAGTCTGCTAGTGCTTTGGAAGCTGCTGAGAATGGGTCTGCCTATGACCAAACTATACCAGAACGGTCTCCTGTAAGACCCATGTCTTTGAGTCAGTCCACATCACAAGTCTAG 1224 44.04 MILRELALVLVIVSDSLPSNSIRLLHRPYGARVNLLSKFCFGIKSWKSNLIISYALKSRAMFLICVSSLTILLDRVIVSINWKKYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKVLVDMIRVPDWAFEAAGQETRVMSQDAATYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANRYVRSQPSSQSYLVRLQGLLRPVRTENIGAHSDLESASALEAAENGSAYDQTIPERSPVRPMSLSQSTSQV 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5561838 5566096 + Maker00021874 Lcy2g0651 625416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0651 407 SUPERFAMILY RING/U-box 246 314 - -
Lcy2g0651 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 311 IPR013083 -
Lcy2g0651 407 MobiDBLite consensus disorder prediction 377 407 - -
Lcy2g0651 407 FunFam E3 ubiquitin-protein ligase SIS3 233 311 - -
Lcy2g0651 407 Pfam Ring finger domain 264 306 IPR001841 -
Lcy2g0651 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 199 386 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Lcy2g0651 407 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Lcy2g0651 407 SMART ring_2 265 305 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0141 Lcy-Chr2:1117976 Lcy2g0651 Lcy-Chr2:5561838 1.81E-06 transposed
Lcy2g0651 Lcy-Chr2:5561838 Lcy5g2227 Lcy-Chr5:45290794 1.02E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0651 K16284 - csv:101208939 633.254