Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0672 | ATGGCGGATCTTTACGGACTCCATCCCCTCGCCGATTACTCTTACCAGTCCTCTTCATCGGCGCCGACGTTGGACGGCCTCGTCCTTCCGGCCAACTATCAAATCTATTCTACTGCTTCTGCAGATTATTCTCACCGCCTTCCGCCTTTTGGATCGGAACACTTGCCGTCGGTTTCGTCGGCAGCCTCCGACGCCGCTTTCATGGCGGTTGAGATTCAAACAGCGCGTGCTTCCGAGGAGTCTGCTGATGTTATTAGAGCCAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTGTCGATGCGTTTGTGGAGTGCCAAAAGAGTGCATTTTCTGGCCTTCGCGTGGTCGGTGCACCGCCGGAGATCGCTAACATTCTAGACAAAAGCAATCGTGGAAGCGACATCGGCGAAAGAACTTCCGGAGTTTCGACTTGCTTGGGTGCCGATCCCGAACTCGATGTGTTCATGGTATTTGCTTTGCTTTCCGAAACATACTGCGGGATACTGGCCAAGTACAAGTTGGATCTCTCACAGCCCTTCGCTGAAGCATCTTCCTTCCTCAACAATATGGAAATGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTATGTTTCCGGTAGAAGTTCTGGAGTTTCAGCTCCTCTTTCCTTCTGTGGTAATGAAGCTGCTGCTGGTTCGTCGGAAGAGGATCTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCAGCTGGTAAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATATTAGTAGCTTAAAGCACGAATTCTCAAAAACTAAAAAGAAGGGAAAACTACCTAAAGAAGCTAGACAGATCCTGCTTGACTGGTGGAACATACATTACAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAGTTGGCCGAGTCGACAGGCCTGGACCAAAAACAAATAAACAACTGGTTCATAAACCAGAGGAAACGGCATTGGAAACCATCCGAAAATATGCAATATGCTGTTATGCATGGCCTTTACGGACCCCTTATAATGGACGAATGA | 1065 | 48.54 | MADLYGLHPLADYSYQSSSSAPTLDGLVLPANYQIYSTASADYSHRLPPFGSEHLPSVSSAASDAAFMAVEIQTARASEESADVIRAKIASHPLYPKLVDAFVECQKSAFSGLRVVGAPPEIANILDKSNRGSDIGERTSGVSTCLGADPELDVFMVFALLSETYCGILAKYKLDLSQPFAEASSFLNNMEMQLNRLCNGTTRGYVSGRSSGVSAPLSFCGNEAAAGSSEEDLSAGEVELQDSQLVNEDRELKDRLLRKYGGYISSLKHEFSKTKKKGKLPKEARQILLDWWNIHYKWPYPTETDKVELAESTGLDQKQINNWFINQRKRHWKPSENMQYAVMHGLYGPLIMDE | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5747501 | 5753690 | + | Maker00022591 | Lcy2g0672 | 625437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0672 | 354 | Pfam | Homeobox KN domain | 291 | 330 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lcy2g0672 | 354 | ProSiteProfiles | ELK domain profile. | 251 | 271 | IPR005539 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | ProSiteProfiles | 'Homeobox' domain profile. | 271 | 334 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | SMART | KNOX1_2 | 83 | 135 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy2g0672 | 354 | SMART | ELK_2 | 251 | 272 | IPR005539 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | SMART | HOX_1 | 273 | 338 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | SMART | KNOX2_2 | 142 | 199 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy2g0672 | 354 | Gene3D | - | 269 | 344 | - | - | |
Lcy2g0672 | 354 | FunFam | Homeobox protein knotted-1-like 2 | 276 | 338 | - | - | |
Lcy2g0672 | 354 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 134 | 341 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy2g0672 | 354 | Pfam | KNOX2 domain | 145 | 198 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy2g0672 | 354 | Pfam | KNOX1 domain | 85 | 132 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy2g0672 | 354 | CDD | homeodomain | 283 | 335 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | ProSitePatterns | 'Homeobox' domain signature. | 309 | 332 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy2g0672 | 354 | Pfam | ELK domain | 251 | 272 | IPR005539 | GO:0003677(InterPro) | |
Lcy2g0672 | 354 | SUPERFAMILY | Homeodomain-like | 273 | 348 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1263 | Lcy-Chr13:29778043 | Lcy2g0672 | Lcy-Chr2:5747501 | 1.03E-41 | dispersed | |
Lcy13g1266 | Lcy-Chr13:29807125 | Lcy2g0672 | Lcy-Chr2:5747501 | 3.83E-55 | dispersed | |
Lcy2g0672 | Lcy-Chr2:5747501 | Lcy9g1996 | Lcy-Chr9:44828107 | 1.84E-83 | dispersed | |
Lcy4g1782 | Lcy-Chr4:43900393 | Lcy2g0672 | Lcy-Chr2:5747501 | 8.09E-79 | transposed | |
Lcy13g1811 | Lcy-Chr13:37054816 | Lcy2g0672 | Lcy-Chr2:5747501 | 6.76E-20 | wgd | |
Lcy2g0672 | Lcy-Chr2:5747501 | Lcy7g0162 | Lcy-Chr7:1454864 | 7.71E-102 | wgd | |
Lcy2g0672 | Lcy-Chr2:5747501 | Lcy9g1867 | Lcy-Chr9:43706358 | 9.87E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19728 | None | None | None | None | Lcy | TF |
Pathway information
