Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0672 ATGGCGGATCTTTACGGACTCCATCCCCTCGCCGATTACTCTTACCAGTCCTCTTCATCGGCGCCGACGTTGGACGGCCTCGTCCTTCCGGCCAACTATCAAATCTATTCTACTGCTTCTGCAGATTATTCTCACCGCCTTCCGCCTTTTGGATCGGAACACTTGCCGTCGGTTTCGTCGGCAGCCTCCGACGCCGCTTTCATGGCGGTTGAGATTCAAACAGCGCGTGCTTCCGAGGAGTCTGCTGATGTTATTAGAGCCAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTGTCGATGCGTTTGTGGAGTGCCAAAAGAGTGCATTTTCTGGCCTTCGCGTGGTCGGTGCACCGCCGGAGATCGCTAACATTCTAGACAAAAGCAATCGTGGAAGCGACATCGGCGAAAGAACTTCCGGAGTTTCGACTTGCTTGGGTGCCGATCCCGAACTCGATGTGTTCATGGTATTTGCTTTGCTTTCCGAAACATACTGCGGGATACTGGCCAAGTACAAGTTGGATCTCTCACAGCCCTTCGCTGAAGCATCTTCCTTCCTCAACAATATGGAAATGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTATGTTTCCGGTAGAAGTTCTGGAGTTTCAGCTCCTCTTTCCTTCTGTGGTAATGAAGCTGCTGCTGGTTCGTCGGAAGAGGATCTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCAGCTGGTAAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATATTAGTAGCTTAAAGCACGAATTCTCAAAAACTAAAAAGAAGGGAAAACTACCTAAAGAAGCTAGACAGATCCTGCTTGACTGGTGGAACATACATTACAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAGTTGGCCGAGTCGACAGGCCTGGACCAAAAACAAATAAACAACTGGTTCATAAACCAGAGGAAACGGCATTGGAAACCATCCGAAAATATGCAATATGCTGTTATGCATGGCCTTTACGGACCCCTTATAATGGACGAATGA 1065 48.54 MADLYGLHPLADYSYQSSSSAPTLDGLVLPANYQIYSTASADYSHRLPPFGSEHLPSVSSAASDAAFMAVEIQTARASEESADVIRAKIASHPLYPKLVDAFVECQKSAFSGLRVVGAPPEIANILDKSNRGSDIGERTSGVSTCLGADPELDVFMVFALLSETYCGILAKYKLDLSQPFAEASSFLNNMEMQLNRLCNGTTRGYVSGRSSGVSAPLSFCGNEAAAGSSEEDLSAGEVELQDSQLVNEDRELKDRLLRKYGGYISSLKHEFSKTKKKGKLPKEARQILLDWWNIHYKWPYPTETDKVELAESTGLDQKQINNWFINQRKRHWKPSENMQYAVMHGLYGPLIMDE 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5747501 5753690 + Maker00022591 Lcy2g0672 625437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0672 354 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0672 354 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677(InterPro)
Lcy2g0672 354 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677(InterPro)
Lcy2g0672 354 SMART KNOX1_2 83 135 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy2g0672 354 SMART ELK_2 251 272 IPR005539 GO:0003677(InterPro)
Lcy2g0672 354 SMART HOX_1 273 338 IPR001356 GO:0003677(InterPro)
Lcy2g0672 354 SMART KNOX2_2 142 199 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy2g0672 354 Gene3D - 269 344 - -
Lcy2g0672 354 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Lcy2g0672 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 341 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy2g0672 354 Pfam KNOX2 domain 145 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy2g0672 354 Pfam KNOX1 domain 85 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy2g0672 354 CDD homeodomain 283 335 IPR001356 GO:0003677(InterPro)
Lcy2g0672 354 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy2g0672 354 Pfam ELK domain 251 272 IPR005539 GO:0003677(InterPro)
Lcy2g0672 354 SUPERFAMILY Homeodomain-like 273 348 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1263 Lcy-Chr13:29778043 Lcy2g0672 Lcy-Chr2:5747501 1.03E-41 dispersed
Lcy13g1266 Lcy-Chr13:29807125 Lcy2g0672 Lcy-Chr2:5747501 3.83E-55 dispersed
Lcy2g0672 Lcy-Chr2:5747501 Lcy9g1996 Lcy-Chr9:44828107 1.84E-83 dispersed
Lcy4g1782 Lcy-Chr4:43900393 Lcy2g0672 Lcy-Chr2:5747501 8.09E-79 transposed
Lcy13g1811 Lcy-Chr13:37054816 Lcy2g0672 Lcy-Chr2:5747501 6.76E-20 wgd
Lcy2g0672 Lcy-Chr2:5747501 Lcy7g0162 Lcy-Chr7:1454864 7.71E-102 wgd
Lcy2g0672 Lcy-Chr2:5747501 Lcy9g1867 Lcy-Chr9:43706358 9.87E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19728 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0672 - - - 0.0