Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0725 ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACAACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA 573 43.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6394783 6398506 + Maker00022267 Lcy2g0725 625490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0725 190 CDD HMG-box_SF 118 154 - -
Lcy2g0725 190 PANTHER PROTEIN YABBY 6-RELATED 9 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lcy2g0725 190 Gene3D High mobility group box domain 103 159 IPR036910 -
Lcy2g0725 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lcy2g0725 190 SUPERFAMILY HMG-box 106 157 IPR036910 -
Lcy2g0725 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1797 Lcy-Chr12:39024582 Lcy2g0725 Lcy-Chr2:6394783 1.66E-54 dispersed
Lcy13g1248 Lcy-Chr13:29356566 Lcy2g0725 Lcy-Chr2:6394783 1.95E-25 dispersed
Lcy2g0725 Lcy-Chr2:6394783 Lcy7g0168 Lcy-Chr7:1520058 3.29E-31 dispersed
Lcy2g0725 Lcy-Chr2:6394783 Lcy4g2099 Lcy-Chr4:47576115 2.66E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19731 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0725 K25796 - csv:101215951 361.688