Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0725 ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACAACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA 573 43.8 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6394783 6398506 + Maker00022267 Lcy2g0725 625490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0725 190 CDD HMG-box_SF 118 154 - -
Lcy2g0725 190 PANTHER PROTEIN YABBY 6-RELATED 9 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lcy2g0725 190 Gene3D High mobility group box domain 103 159 IPR036910 -
Lcy2g0725 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lcy2g0725 190 SUPERFAMILY HMG-box 106 157 IPR036910 -
Lcy2g0725 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0725 K25796 - - csv:101215951 361.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1797 Lcy-Chr12:39024582 Lcy2g0725 Lcy-Chr2:6394783 1.66E-54 dispersed
Lcy13g1248 Lcy-Chr13:29356566 Lcy2g0725 Lcy-Chr2:6394783 1.95E-25 dispersed
Lcy2g0725 Lcy-Chr2:6394783 Lcy7g0168 Lcy-Chr7:1520058 3.29E-31 dispersed
Lcy2g0725 Lcy-Chr2:6394783 Lcy4g2099 Lcy-Chr4:47576115 2.66E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1797 . 78 236 C2C2-YABBY Transcription Factor Family AT2G45190 59.9 1.5e-43 173.3
Lcy12g1797 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 2.5e-44 176.0
Lcy2g0725 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.0e-43 171.0
Lcy12g1797 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 7.0e-51 198.0
Lcy2g0725 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.6e-63 239.6
Lcy4g2099 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Lcy12g1797 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.7 2.2e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19731 None None None None Lcy TF