Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0725 | ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACGAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCTTCATCCAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACAACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTTGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCTCTATTAAACAAATGA | 573 | 43.8 | MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6394783 | 6398506 | + | Maker00022267 | Lcy2g0725 | 625490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0725 | 190 | CDD | HMG-box_SF | 118 | 154 | - | - | |
Lcy2g0725 | 190 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 173 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Lcy2g0725 | 190 | Gene3D | High mobility group box domain | 103 | 159 | IPR036910 | - | |
Lcy2g0725 | 190 | FunFam | axial regulator YABBY 5-like | 102 | 160 | - | - | |
Lcy2g0725 | 190 | SUPERFAMILY | HMG-box | 106 | 157 | IPR036910 | - | |
Lcy2g0725 | 190 | Pfam | YABBY protein | 8 | 164 | IPR006780 | GO:0007275(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1797 | Lcy-Chr12:39024582 | Lcy2g0725 | Lcy-Chr2:6394783 | 1.66E-54 | dispersed | |
Lcy13g1248 | Lcy-Chr13:29356566 | Lcy2g0725 | Lcy-Chr2:6394783 | 1.95E-25 | dispersed | |
Lcy2g0725 | Lcy-Chr2:6394783 | Lcy7g0168 | Lcy-Chr7:1520058 | 3.29E-31 | dispersed | |
Lcy2g0725 | Lcy-Chr2:6394783 | Lcy4g2099 | Lcy-Chr4:47576115 | 2.66E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19731 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0725 | K25796 | - | csv:101215951 | 361.688 |