Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0729 ATGTGGCGTCGTATTTATTTGGTTTCCCGGTTTAACAAAACCCCACTTTCTTCGACCAAACCCAACGCCATTTTCTTCGATAATGGTTGGTTGTTTGTCTTATCATTTCTTCTTCTCACTGCTCCTCCTCTGCTGATTCAGAAAATTCCGCTGAATAAGGATGCGAAATTGATAACTATTGTCCTTGCCCAAAGCCGAGCTGTGAACAATCGCGGCGCGGAGTTGTGTTTTCTTCTGGGAAATGCGATCATGAAGCGACTTTCTAGAAAAGTTGGGAAGTATGAGGTAGGGCGGACTGTTGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCACGCAACACGGAGACGGGGGAGGCTGTGGCTATGAAAGTTTTGGCCAAGAGTAGCATTCTCAAGCACAAAATGGTAGAACAGGGATTGTATGCAATGCCCCTGCCCTTTAAGATCAAGAGGGAGATATCGATAATGAAAATTGTCAGGCATCCACATATTGTGAGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTCCAAAAGAAGCTTCCCGAAATTGAGTCTAGACGGTACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTCGATGCTGATGAAAATCTGAAGGTTTCCGACTTTGGACTGAGTGCACTGTCTCAACAAGGCGTTGAACTGCTTTACACCACATGTGGAACTCCCAATTATGTTGCACCTGAGGTTCTTGGAGGTCAGGGTTATGATGGTGCAGCTGCGGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAACAAGAAGATAAATGCAGCAGAGTATTCCTGCCCCTACTGGTTTTCATCTGGTGCGAAGTCCTTGATTCAAAAGATCCTTGATCCAAATCCTAAAACTGTGAGTTTTTCCAGTTTCAGAGGTAGAGTTATGGCCTATGGGTTTAATGATGTATCAGTTATTCTGCAAGTGTTGGAAATATTTTTCTTGTTGGGTGAGTTCAGTTCATATGAAATTCCGGCATTCATTCGTATTGTTGTGAGGTTTTCATTTGCATTGCAGCGGATTCGAATAGAAGAAATTAGAAAAGATCCTTGGTTCAGAAGAAACTACATCCCTGCTAAATTAGGAGAAGATGAGGAAGTAAACTTGGATGATGTTCAGGCTGTTTTTGATGACATTGAGGAAGAATATGTTGCTGATCAGTCAGAAAAAAGTGACGATGGTCCTTTGATAATGAATGCATTTGAGATGATAACGTTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACAATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCTACCATTGAAGCTGTAGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGGACAGTTTGCAGCTGTACTGGAGATATATGAAGTGGCGCCATCACTTTTTATGGTGGATGTTCGCAAAGCTGCTGGAGATACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAACATAATCTGGAAACCATCTGAGAGTGTGGGGAACTGA 1755 42.39 MWRRIYLVSRFNKTPLSSTKPNAIFFDNGWLFVLSFLLLTAPPLLIQKIPLNKDAKLITIVLAQSRAVNNRGAELCFLLGNAIMKRLSRKVGKYEVGRTVGEGTFAKVKFARNTETGEAVAMKVLAKSSILKHKMVEQGLYAMPLPFKIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEIESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADENLKVSDFGLSALSQQGVELLYTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNKKINAAEYSCPYWFSSGAKSLIQKILDPNPKTVSFSSFRGRVMAYGFNDVSVILQVLEIFFLLGEFSSYEIPAFIRIVVRFSFALQRIRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVQAVFDDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDNIKRQTRFVSRKPANFIMSTIEAVAEAMGLNVHTRNFKTRLERRTGHRVGQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6426688 6432001 + Maker00021833 Lcy2g0729 625494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0729 584 CDD CIPK_C 458 573 - -
Lcy2g0729 584 Gene3D Kinase associated domain 1, KA1 451 577 - -
Lcy2g0729 584 Pfam Protein kinase domain 94 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0729 584 ProSitePatterns Protein kinases ATP-binding region signature. 100 132 IPR017441 GO:0005524(InterPro)
Lcy2g0729 584 FunFam Non-specific serine/threonine protein kinase 451 577 - -
Lcy2g0729 584 SUPERFAMILY Protein kinase-like (PK-like) 91 343 IPR011009 -
Lcy2g0729 584 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 86 562 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy2g0729 584 ProSiteProfiles NAF domain profile. 452 476 IPR018451 GO:0007165(InterPro)
Lcy2g0729 584 FunFam Non-specific serine/threonine protein kinase 87 350 - -
Lcy2g0729 584 Pfam NAF domain 454 513 IPR004041 GO:0007165(InterPro)
Lcy2g0729 584 Gene3D Transferase(Phosphotransferase) domain 1 85 346 - -
Lcy2g0729 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0729 584 ProSiteProfiles Protein kinase domain profile. 94 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0729 584 FunFam Non-specific serine/threonine protein kinase 85 183 - -
Lcy2g0729 584 SMART serkin_6 94 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1456 Lcy-Chr13:33131246 Lcy2g0729 Lcy-Chr2:6426688 2.42E-125 dispersed
Lcy2g0729 Lcy-Chr2:6426688 Lcy4g2024 Lcy-Chr4:46752930 1.96E-122 dispersed
Lcy2g0729 Lcy-Chr2:6426688 Lcy5g1703 Lcy-Chr5:39519352 2.05E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65725 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0729 - - - 0.0