Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0734 ATGCCCAAGTTTAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCTGAAATTCGCCACCCTTTACTGAAGAGGAGGATATGGTTGGGGACGTTTGACACGGCGGAGGAAGCGGCGAGGGCGTACGATCAAGCTGCGATTTTGATGAGCGGTCGGAATGCCAAAACCAATTTCCCGACGACCCAAGCTCCCAATGGAGACACCAACGTTGTTACGGCCAAGGATTCACCCAAGGGTTTGTCTGAAATATTACAGGCCAAGCTCAAGAAATGCTGCCGTACTCCGTCGCCGTCGATGACGTGCCTGAGGCTCGACACTGAGAATTCGAACATCGGTGTGTGGCAGAAGAGTGCCGGGCAGCGGTCCGCGTCCAGCTGGGTCATGACCGTCGAGCTCGGAAACAAGAAGAGCCACGACAACGACATGGATTCTCCGATGGCTGTGGTTGGTTCCGATGAGTCTCTGGTGGCGGAGGAGGTGGCGGAGATTCGATCGGAGTTGGATGAAGAAGAGAGAATGGTGGCGTTGCAAATGGTGGAGGAACTGCTTCATATCAACTATGGTGATCCCAACGAATTGTTTGAGATTCAACAAGGGAAGGATGTTTATCTTTAG 627 52.79 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFDTAEEAARAYDQAAILMSGRNAKTNFPTTQAPNGDTNVVTAKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKSAGQRSASSWVMTVELGNKKSHDNDMDSPMAVVGSDESLVAEEVAEIRSELDEEERMVALQMVEELLHINYGDPNELFEIQQGKDVYL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6485901 6486716 + Maker00022840 Lcy2g0734 625499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0734 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Lcy2g0734 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lcy2g0734 208 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0734 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 134 IPR050913 -
Lcy2g0734 208 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0734 Lcy-Chr2:6485901 Lcy13g1039 Lcy-Chr13:22711472 5.60E-69 dispersed
Lcy12g0596 Lcy-Chr12:7356400 Lcy2g0734 Lcy-Chr2:6485901 9.43E-55 wgd
Lcy2g0734 Lcy-Chr2:6485901 Lcy4g2105 Lcy-Chr4:47644326 4.99E-76 wgd
Lcy2g0734 Lcy-Chr2:6485901 Lcy9g1835 Lcy-Chr9:43427351 3.66E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19732 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0734 - - - 0.0