Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0768 | ATGGAGGGCGTCAGAAACAGAGGGGTTTTCCGGGTTTCTGTTTGTGGGCAAGAAGAGCTCGAGCAACTCTCCAGAGATGGCAGTCAGTACAGCCTCACCACTGGGATATTGCCCTCTCTCGGCGCTAGAAGCAACCGGAGAGTTAAGCTTCGTCGGTTTATCATATCGCCCTATGACCGTCGATACAGGTGGGCTTGTTTTTCCATCTTATTGGATTCCCCTGCTTGTAAATTTTGCTCCTCTCTATTTGGTTTTGTAAATAATGCACTGGCTCTGCGCCTTTTTGTCTTTGTTTATGCGTTTCGTCCTATTTTAGTTTATTCTAAAACGTCAGATGATTCTCCTCATGCCTTAAAGATTTGGGAGACGTTTCTCGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAGTCGCCACTCTCAGTTACGGACAATGTGGTTAATGGATTTTTTGCAGTGGATATCGTTCTCACATTCTTTGTAGCTTATCTTGATAAAGCCACCTATTTACTTGTTGATGAACCGAAGAAGATTGCTCTGAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCAGAAGAGTCAGTGCTCTCTTTTCCAGACTGGAAAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCCGCATGCTTCTATTACCTTATTGCTGCTCGATATCATGACCCAAAAAGGACGTGGATTGGAGCATCTATGGAGAACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCCATTTATTGGTCAATCACTACCCTAACCACTGTCGGCTATGGTGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAACATGACCAACTTAGTTGTACATGGGACCAGTAGAACTAGAAAATTTAGAGATACCATACAAGCGGCTTCTAGTTTTGCTCACAGGAATCAGCTTCCTCCCCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAAGGATTGCAGCAGCAAGAAACTCTCGACTCCTTGCCTAAAGCCATCCGATCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAAGCAGAGTATTTTCCTCCAAAAGAAGATGTGATTTTGCAAAATGAAGCCCCAACAGACTTCTACATTCTTGTCACGGGTGCCGTGGTTGTTGGAGAGGCTAAAACCGGTGAACTTTGTGGTGAGATTGGGGTGTTATGTTACAGGCCACAACTATTTACAGTGCGCACTAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGCTTTCCTGAATATCGTTCAATCTAATGTCGGTGATGGGACCATCATCATGAACAATCTTCTTCAGCATTTGAAAGACCAAAAAGACAAGGACCCCATCATGGAGGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTCTTACACCAGCTTTTGAAACGAGGTCTCGATCCAAATGAATCCGACAACAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCGGATCCCAATAGTAGAGATTCAGATGGGAATGTGCCATTGTGGGAGGCGATACTAGGTGGCCATGAACCGGTTGTTCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGAGGTCGGTCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTCTCCGATATGGAGGAGACGTTACGAGTGCCAAGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGACGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATGAAAGAGTCAAAAACTCAATCTGTCGTCGCCATTCCTGAGAAGCAGACTGGTATTCGGTTCCTTGGAAGGTTTACAAGCGAGCCTATGATTCGCCCTCTACCTCAGGAAGGAAATGATGGTTCATGGCCGGGTCAATCTCGTCCACGGCGTAGGACTAACAACTTCAACAACTCATTGTTTGGTATCATGTCAGCAGCACAATCAGGCGATAAAGACATCCTTTTCCCTGATAACCAAACCAGAGGAGAGAACTCTGGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTTCCGGGAAGCTGGTGCTGCTTCCAGGAAGCTACGACGAGCTGCTTGAGATCGGTGCCAAGAAATATGGGATTGTGGCTTCAAAGGTAGTGAACATAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGTGATCATCTTGTTTTTGTCAGCGATGGAAGAACCATATAA | 2757 | 44.21 | MEGVRNRGVFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRWACFSILLDSPACKFCSSLFGFVNNALALRLFVFVYAFRPILVYSKTSDDSPHALKIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKATYLLVDEPKKIALKYASSWLVFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDQKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDYGADPNSRDSDGNVPLWEAILGGHEPVVQLLIDNGANLRSGEVGHFACTAAEQNNLQLLKEILRYGGDVTSAKNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTMKESKTQSVVAIPEKQTGIRFLGRFTSEPMIRPLPQEGNDGSWPGQSRPRRRTNNFNNSLFGIMSAAQSGDKDILFPDNQTRGENSGTNPARVIISCPEIGEVSGKLVLLPGSYDELLEIGAKKYGIVASKVVNIDGAAIEDIEVIRDGDHLVFVSDGRTI | 918 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6828473 | 6833984 | + | Maker00022241 | Lcy2g0768 | 625533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat region circular profile. | 605 | 636 | - | - | |
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat profile. | 702 | 734 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SUPERFAMILY | Voltage-gated potassium channels | 114 | 357 | - | - | |
| Lcy2g0768 | 918 | SUPERFAMILY | cAMP-binding domain-like | 361 | 545 | IPR018490 | - | |
| Lcy2g0768 | 918 | FunFam | Potassium channel KAT2 | 424 | 549 | - | - | |
| Lcy2g0768 | 918 | SMART | cnmp_10 | 436 | 542 | IPR000595 | - | |
| Lcy2g0768 | 918 | Gene3D | - | 116 | 357 | - | - | |
| Lcy2g0768 | 918 | Pfam | Ankyrin repeats (3 copies) | 577 | 665 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | Pfam | Ankyrin repeats (3 copies) | 676 | 752 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | ProSiteProfiles | KHA domain profile. | 849 | 918 | IPR021789 | - | |
| Lcy2g0768 | 918 | Pfam | KHA, dimerisation domain of potassium ion channel | 849 | 911 | IPR021789 | - | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 304 | 321 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 131 | 138 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 154 | 164 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 165 | 174 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 348 | 357 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | EAG/ELK/ERG potassium channel family signature | 330 | 341 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lcy2g0768 | 918 | Pfam | Ion transport protein | 119 | 363 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy2g0768 | 918 | MobiDBLite | consensus disorder prediction | 797 | 812 | - | - | |
| Lcy2g0768 | 918 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 436 | 527 | IPR000595 | - | |
| Lcy2g0768 | 918 | Pfam | Cyclic nucleotide-binding domain | 455 | 530 | IPR000595 | - | |
| Lcy2g0768 | 918 | CDD | CAP_ED | 436 | 530 | IPR000595 | - | |
| Lcy2g0768 | 918 | Gene3D | Jelly Rolls | 400 | 552 | IPR014710 | - | |
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat profile. | 605 | 637 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | Gene3D | - | 573 | 757 | IPR036770 | - | |
| Lcy2g0768 | 918 | FunFam | Potassium channel SKOR | 119 | 357 | - | - | |
| Lcy2g0768 | 918 | PANTHER | POTASSIUM CHANNEL AKT1 | 22 | 96 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat region circular profile. | 638 | 665 | - | - | |
| Lcy2g0768 | 918 | MobiDBLite | consensus disorder prediction | 787 | 812 | - | - | |
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat profile. | 638 | 670 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | ProSiteProfiles | Ankyrin repeat region circular profile. | 702 | 733 | - | - | |
| Lcy2g0768 | 918 | PRINTS | Ankyrin repeat signature | 718 | 732 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | PRINTS | Ankyrin repeat signature | 606 | 621 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SUPERFAMILY | Ankyrin repeat | 576 | 755 | IPR036770 | - | |
| Lcy2g0768 | 918 | SMART | ANK_2a | 638 | 667 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SMART | ANK_2a | 669 | 698 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SMART | ANK_2a | 605 | 634 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SMART | ANK_2a | 702 | 731 | IPR002110 | GO:0005515(InterPro) | |
| Lcy2g0768 | 918 | SMART | ANK_2a | 572 | 601 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1159 | Lcy-Chr10:34123061 | Lcy2g0768 | Lcy-Chr2:6828473 | 3.17E-89 | dispersed | |
| Lcy13g1979 | Lcy-Chr13:38827616 | Lcy2g0768 | Lcy-Chr2:6828473 | 0 | dispersed | |
| Lcy2g0768 | Lcy-Chr2:6828473 | Lcy5g1767 | Lcy-Chr5:40356982 | 4.32E-175 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy2g0768 | K21867 | - | csv:101220784 | 1555.42 |