Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0769 ATGAAGGGGGAAGTACAATTGAATTCCTCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCTGATTCATCCCATGGAACCTCCGATGAAATCAAGGATGATGAGGATACTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTGGAGAGCGACGCTGAACCAGGTGGATTTCATTGCTCGGGTAATACCTTCTTCTTCCACTTGGCTCAAATGGCAATTTTCCGTTTTACAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGGTCTTGTCTTGATCATTGGCGCTCCGTTAAGGCAAATTTCTTTATTTTAGAAGGGTTTGCTTTCTCGCATTGCACAACGTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGGAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTCTAGCTGTACAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGGAATTCTTTCAGTGATGGATGGGATCGTGTTCTGTCTAAACATCCTATTCCATTTTATTACTGTATCGGGGTTCTGGCCTTCTTTGTTCTGCTTGGGTTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGTGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCTCTTGTTATTGTTTTCGTTGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAACTGACAAAAGAATACGTGGTGGAGGATCTTCACGGCAGTTATACCCCTCCAAAATTGGATCCTGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1005 43.18 MKGEVQLNSSIGQNPSDSDPLLENQPDSSHGTSDEIKDDEDTEAGSIPCCRICLESDAEPGGFHCSGNTFFFHLAQMAIFRFTEDELISPCMCKGTQQFVHRSCLDHWRSVKANFFILEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRVLSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGSYTPPKLDPEHEQHLKMLQLL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6834968 6837643 - Maker00021818 Lcy2g0769 625534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0769 334 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 333 - -
Lcy2g0769 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 143 IPR013083 -
Lcy2g0769 334 MobiDBLite consensus disorder prediction 1 43 - -
Lcy2g0769 334 MobiDBLite consensus disorder prediction 6 29 - -
Lcy2g0769 334 ProSiteProfiles Zinc finger RING-CH-type profile. 42 136 IPR011016 GO:0008270(InterPro)
Lcy2g0769 334 SUPERFAMILY RING/U-box 83 134 - -
Lcy2g0769 334 Pfam RING-variant domain 85 114 IPR011016 GO:0008270(InterPro)
Lcy2g0769 334 SMART ringv_2 49 130 IPR011016 GO:0008270(InterPro)
Lcy2g0769 334 CDD RING_CH-C4HC3_MARCH 50 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0045 Lcy-Chr13:573683 Lcy2g0769 Lcy-Chr2:6834968 1.78E-38 dispersed
Lcy1g0754 Lcy-Chr1:6463853 Lcy2g0769 Lcy-Chr2:6834968 9.33E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0769 - - - 0.0