Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0780 AGCTTCTTTCTCCACAACTACGATTGCCATTATTCTGCTTTGCTTGCTTTTGGCAGCAATTCAACAGTTGGGGTTCTGAGAAAAATCAAATCAAATCAAAGACCAGAACCTGCATCTAAATCACCTTTGAAAGGGACAAAGGGGCTTGATCTGATCTGGCCTGAATGTTCTTCATCTTCCTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTCTGTCTGATGATGATGCCATGAGTGTACTAAAACTGGATTCTTCTTCTTCCAGCTGCTACATGACGAGTCTCTCTGTGTTAACAGAAAAAAGAAGAATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATACCATCTTCTCAAATGGTGTTGAAATCCCTACATGGATCGAAGGATGGTGAGAAGACTAGTTTATGGAAAAGGAAAGCAAAAAGGAGAGCTAAAGGACATGCCATGGAAGGACTGAAGCAAGAGGAGCTTGATCCAAATCTGGAGTTTCCCTCTTCTTCTTCCTGCAAAAGCTTAACATTTCCTAGAAGGCCAGACTTTGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAATCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTAAGATGGAAGCAACTTATAGTATTGATCAAAAGATTTCTTCAAAGATGCAATATAAATATGAAAGTCGACTGTACTTTATTGAGCTTGCAGGTTAAGATTACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAGTATACTGACCGAGTTGGTCAAACATTATAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCACATCAAAGGATTTCACTGTCATTTTGGCTGATGAGGAAGAGGGGGCAACCACTCCCAGGCAATTTCTCTTCTTAGCTTCACATATTTTTGCTTTTTCTTTGTCAGAAAACTTTAGTTTAATATGGGGTAATCATGTCAGGGAACGAGAATTTAAGGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTTGCCGGTAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATTATTGACATCGTCTTGCGGGAGCTTCATGCCCAAAGATATATATCAGTTGGGCGATTCTTTTACACTCCTTGCATTAAGAAACCTCAGAATGTTGGGGGTGGTTTGCAAGCATGGCGTGGCTTCTATCAAAGCATCCGTCCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTCGCTCAAATTTTAAACAAAGATGTGTATTCAAGACCATTGTCCGATGCTGATCGTATCAAGGTACCATGTGTTTTCTGGATACTTTTAGCTTCTTGA 1446 40.59 SFFLHNYDCHYSALLAFGSNSTVGVLRKIKSNQRPEPASKSPLKGTKGLDLIWPECSSSSSFSSSSSSSSSSCLSDDDAMSVLKLDSSSSSCYMTSLSVLTEKRRMPYMQMEPEEKHVIPSSQMVLKSLHGSKDGEKTSLWKRKAKRRAKGHAMEGLKQEELDPNLEFPSSSSCKSLTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVRWKQLIVLIKRFLQRCNINMKVDCTLLSLQVKITPEVTSRKMKKSILTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFTSKDFTVILADEEEGATTPRQFLFLASHIFAFSLSENFSLIWGNHVREREFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLRELHAQRYISVGRFFYTPCIKKPQNVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKVPCVFWILLAS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6929451 6938422 - Maker00022391 Lcy2g0780 625545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0780 481 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 182 460 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lcy2g0780 481 SMART DUF1785_2 391 443 IPR014811 -
Lcy2g0780 481 Pfam N-terminal domain of argonaute 191 382 IPR032474 -
Lcy2g0780 481 Pfam Argonaute linker 1 domain 392 442 IPR014811 -
Lcy2g0780 481 SUPERFAMILY PAZ domain 357 458 IPR036085 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0780 Lcy-Chr2:6929451 Lcy5g2573 Lcy-Chr5:48432559 2.68E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0780 K11593 - csv:101213206 513.457