Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0806 ATGGAGAATCACTGCAATGGAAATTCTGAATCTCACGACGTCCACATACCCAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCTGTTTCAGGAAAAACTTTCGAGACGATAGATCCGAGAACCGGGGAGGTTATCACGACGGTGGCCGCCGGTGACAAAGAAGACGTCGATCTGGCCGTGAAAGCAGCCCGCGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGTTTTGAGAGGGGGAAAATTATGTTGAAACTAGCGGAATTAATGGAGGGACACGTGGAGGAATTGGCAGCGTTGGATACGATCGATGCGGGGAAATCGTTCAAGATGGGGAAGATCGTGGACATACCGTCGGCTGCAAATACGCTACGGTACTACGCAGGTGCAGTGGATAAAGTCCACGGAGAGGTACTGAAAATGTCAAAGCCGCTTCACGGTTACACGTTATTGGAGCCGATCGGAGTGGTGGGCCACATCATACCGTGGAACTTTCCGACGACCATGTTCTTCATGAAAGTGAGCCCGGCGTTGGCCTCCGGCTGCACCATGATCGTCAAGCCCGCCGAACAGACGCCGCTCTCCGCCCTCTTCTACGCCCACCTCGCCAAACTGGCTGGGATTCCAGATGGAGTACTCAACGTCGTGACTGGTTTCGGTGGGACCGCAGGATCAGCCATTGCCTCCCACATGGACATTGACAAGGTAATTTGTTTTTTGTTTTTTGCTTCGAGACGGCCCTTTGCCGTTTCCTCCGTCGTCGAGACTGCCTTTGTTGTTTCTCACGTCGAGGTTGCCGTGAGCTTCACAGGATCAACGAAGGTGGGAAGGCTGGTAATGGAGGCGGCAAGTGCCAGTAATTTGAAGCAAGTGTCGTTGGAATTAGGAGGCAAATCGCCCCTCCTAATCTTCGATGATGCCGATGTCAATAAAGCCGCTGATCTTGCTCTCCTCGGCATTCTCTATAACAAGGGAGAAATTTGCGTGGCTAGCTCCCGAGTTCTGGTTCAAGAAGGGATTTATGACGAATTCGTTAAAAAGATAAGTGAAAAGGCTAAGTCTTGGGTTGTTGGAGACCCTTTTGATCCTAAGGTTCAATATGGACCCCAGGTGGACAAAAAGCAATTCGAGAAAGTGCTGTCATACATAGAACACGGTAAAAAAGGAGCCACATTGCTAACAGGCGGGAAGCGCAAGGGCGAAGTGGGGTATTACATTGAGCCAACGATCTTCACAGATGTCAAGGAAGACTCACTAATTGTACAGGAGGAAATCTTCGGCCCAGTCCTCTGTGTCATAAAGTTCAAGACGATCGAGGAGGGAATAAAGCGTGCAAACGACACCAAGTACGGGCTTGCAGCAGGCATAGTGACCAACAACATAGACATAGCCAACACCGTTTCGAGGTCGATCAGAGCCGGTACCATTTGGATCAACTGTTACTTTGCTTTCGACGACAGCTGTCCATTTGGAGGCTACAAGATGAGCGGGTTTGGTAGAGATCTTGGAATGCACGCTCTTCACAAGTATCTTCAAACCAAAGCCGTCGTCACTCCTTTGATCAACACTCCTTGGCTTTGA 1599 50.09 MENHCNGNSESHDVHIPKIKFTKLFINGQFVDSVSGKTFETIDPRTGEVITTVAAGDKEDVDLAVKAAREAFDHGPWPRMSGFERGKIMLKLAELMEGHVEELAALDTIDAGKSFKMGKIVDIPSAANTLRYYAGAVDKVHGEVLKMSKPLHGYTLLEPIGVVGHIIPWNFPTTMFFMKVSPALASGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGFGGTAGSAIASHMDIDKVICFLFFASRRPFAVSSVVETAFVVSHVEVAVSFTGSTKVGRLVMEAASASNLKQVSLELGGKSPLLIFDDADVNKAADLALLGILYNKGEICVASSRVLVQEGIYDEFVKKISEKAKSWVVGDPFDPKVQYGPQVDKKQFEKVLSYIEHGKKGATLLTGGKRKGEVGYYIEPTIFTDVKEDSLIVQEEIFGPVLCVIKFKTIEEGIKRANDTKYGLAAGIVTNNIDIANTVSRSIRAGTIWINCYFAFDDSCPFGGYKMSGFGRDLGMHALHKYLQTKAVVTPLINTPWL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7247642 7252582 - Maker00022515 Lcy2g0806 625571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0806 532 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 526 IPR016163 GO:0016620(InterPro)
Lcy2g0806 532 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 299 306 IPR029510 GO:0016491(InterPro)
Lcy2g0806 532 SUPERFAMILY ALDH-like 272 528 IPR016161 GO:0016491(InterPro)
Lcy2g0806 532 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 327 338 IPR016160 GO:0016491(InterPro)
Lcy2g0806 532 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 6 302 IPR016162 GO:0016491(InterPro)
Lcy2g0806 532 FunFam Aldehyde dehydrogenase3 303 491 - -
Lcy2g0806 532 SUPERFAMILY ALDH-like 16 243 IPR016161 GO:0016491(InterPro)
Lcy2g0806 532 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 264 524 - GO:0004029(PANTHER)
Lcy2g0806 532 Pfam Aldehyde dehydrogenase family 30 243 IPR015590 GO:0016491(InterPro)
Lcy2g0806 532 Pfam Aldehyde dehydrogenase family 266 522 IPR015590 GO:0016491(InterPro)
Lcy2g0806 532 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 252 - -
Lcy2g0806 532 FunFam Aldehyde dehydrogenase, putative 494 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0806 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0648 Lcy-Chr2:5532930 Lcy2g0806 Lcy-Chr2:7247642 5.02E-188 dispersed
Lcy2g0806 Lcy-Chr2:7247642 Lcy8g1656 Lcy-Chr8:43168761 5.04E-69 dispersed
Lcy2g0806 Lcy-Chr2:7247642 Lcy13g1208 Lcy-Chr13:28743166 1.18E-197 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003336 2 1 7 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 49