Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0806 | ATGGAGAATCACTGCAATGGAAATTCTGAATCTCACGACGTCCACATACCCAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCTGTTTCAGGAAAAACTTTCGAGACGATAGATCCGAGAACCGGGGAGGTTATCACGACGGTGGCCGCCGGTGACAAAGAAGACGTCGATCTGGCCGTGAAAGCAGCCCGCGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGTTTTGAGAGGGGGAAAATTATGTTGAAACTAGCGGAATTAATGGAGGGACACGTGGAGGAATTGGCAGCGTTGGATACGATCGATGCGGGGAAATCGTTCAAGATGGGGAAGATCGTGGACATACCGTCGGCTGCAAATACGCTACGGTACTACGCAGGTGCAGTGGATAAAGTCCACGGAGAGGTACTGAAAATGTCAAAGCCGCTTCACGGTTACACGTTATTGGAGCCGATCGGAGTGGTGGGCCACATCATACCGTGGAACTTTCCGACGACCATGTTCTTCATGAAAGTGAGCCCGGCGTTGGCCTCCGGCTGCACCATGATCGTCAAGCCCGCCGAACAGACGCCGCTCTCCGCCCTCTTCTACGCCCACCTCGCCAAACTGGCTGGGATTCCAGATGGAGTACTCAACGTCGTGACTGGTTTCGGTGGGACCGCAGGATCAGCCATTGCCTCCCACATGGACATTGACAAGGTAATTTGTTTTTTGTTTTTTGCTTCGAGACGGCCCTTTGCCGTTTCCTCCGTCGTCGAGACTGCCTTTGTTGTTTCTCACGTCGAGGTTGCCGTGAGCTTCACAGGATCAACGAAGGTGGGAAGGCTGGTAATGGAGGCGGCAAGTGCCAGTAATTTGAAGCAAGTGTCGTTGGAATTAGGAGGCAAATCGCCCCTCCTAATCTTCGATGATGCCGATGTCAATAAAGCCGCTGATCTTGCTCTCCTCGGCATTCTCTATAACAAGGGAGAAATTTGCGTGGCTAGCTCCCGAGTTCTGGTTCAAGAAGGGATTTATGACGAATTCGTTAAAAAGATAAGTGAAAAGGCTAAGTCTTGGGTTGTTGGAGACCCTTTTGATCCTAAGGTTCAATATGGACCCCAGGTGGACAAAAAGCAATTCGAGAAAGTGCTGTCATACATAGAACACGGTAAAAAAGGAGCCACATTGCTAACAGGCGGGAAGCGCAAGGGCGAAGTGGGGTATTACATTGAGCCAACGATCTTCACAGATGTCAAGGAAGACTCACTAATTGTACAGGAGGAAATCTTCGGCCCAGTCCTCTGTGTCATAAAGTTCAAGACGATCGAGGAGGGAATAAAGCGTGCAAACGACACCAAGTACGGGCTTGCAGCAGGCATAGTGACCAACAACATAGACATAGCCAACACCGTTTCGAGGTCGATCAGAGCCGGTACCATTTGGATCAACTGTTACTTTGCTTTCGACGACAGCTGTCCATTTGGAGGCTACAAGATGAGCGGGTTTGGTAGAGATCTTGGAATGCACGCTCTTCACAAGTATCTTCAAACCAAAGCCGTCGTCACTCCTTTGATCAACACTCCTTGGCTTTGA | 1599 | 50.09 | MENHCNGNSESHDVHIPKIKFTKLFINGQFVDSVSGKTFETIDPRTGEVITTVAAGDKEDVDLAVKAAREAFDHGPWPRMSGFERGKIMLKLAELMEGHVEELAALDTIDAGKSFKMGKIVDIPSAANTLRYYAGAVDKVHGEVLKMSKPLHGYTLLEPIGVVGHIIPWNFPTTMFFMKVSPALASGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGFGGTAGSAIASHMDIDKVICFLFFASRRPFAVSSVVETAFVVSHVEVAVSFTGSTKVGRLVMEAASASNLKQVSLELGGKSPLLIFDDADVNKAADLALLGILYNKGEICVASSRVLVQEGIYDEFVKKISEKAKSWVVGDPFDPKVQYGPQVDKKQFEKVLSYIEHGKKGATLLTGGKRKGEVGYYIEPTIFTDVKEDSLIVQEEIFGPVLCVIKFKTIEEGIKRANDTKYGLAAGIVTNNIDIANTVSRSIRAGTIWINCYFAFDDSCPFGGYKMSGFGRDLGMHALHKYLQTKAVVTPLINTPWL | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 7247642 | 7252582 | - | Maker00022515 | Lcy2g0806 | 625571 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0806 | 532 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 303 | 526 | IPR016163 | GO:0016620(InterPro) | |
| Lcy2g0806 | 532 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 299 | 306 | IPR029510 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | SUPERFAMILY | ALDH-like | 272 | 528 | IPR016161 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 327 | 338 | IPR016160 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 6 | 302 | IPR016162 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | FunFam | Aldehyde dehydrogenase3 | 303 | 491 | - | - | |
| Lcy2g0806 | 532 | SUPERFAMILY | ALDH-like | 16 | 243 | IPR016161 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 264 | 524 | - | GO:0004029(PANTHER) | |
| Lcy2g0806 | 532 | Pfam | Aldehyde dehydrogenase family | 30 | 243 | IPR015590 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | Pfam | Aldehyde dehydrogenase family | 266 | 522 | IPR015590 | GO:0016491(InterPro) | |
| Lcy2g0806 | 532 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 26 | 252 | - | - | |
| Lcy2g0806 | 532 | FunFam | Aldehyde dehydrogenase, putative | 494 | 520 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0648 | Lcy-Chr2:5532930 | Lcy2g0806 | Lcy-Chr2:7247642 | 5.02E-188 | dispersed | |
| Lcy2g0806 | Lcy-Chr2:7247642 | Lcy8g1656 | Lcy-Chr8:43168761 | 5.04E-69 | dispersed | |
| Lcy2g0806 | Lcy-Chr2:7247642 | Lcy13g1208 | Lcy-Chr13:28743166 | 1.18E-197 | transposed |
Pathway information