Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0819 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCGACTAACACCACATCACCCCCCCCTCCCACCACCGACGCACCACCCCCAGCGCCTCCGTCTCTCTCACCGCCGCCTCCTGATACTCCCTCTCAGACTCCGCCGCCCTCCACCACTCCTTCGCCGCCACCTCCGAACAGTACCACTCAATCTCCGCCTACTTCCTCTCCTTCACCGCCGACCGCGCCTTCGAGCTCTCCGCCGCCGCCTACCAACTCGACGGCTCCACCGCAGCTGCCGAGTCCGACGCCGCCGTCGAATTCTGGTACACCTGCGAATCCGGGAGGAAGTCAGGCTCCGCCCTCGGAAGCGACACCGTCTCCTTCACCCTCGTCGGGAGTTTCGGCCGGGCTTGTGGCTGGGGTCGCCATTGCTGGAGTGGTGGTGGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTCAGAAAGAAGAGAAGACGCGACGAGGAGGCGTACTACCGGCCGCCGCCGCCGCCACCGGCGGCGTTTAAAGATGGCCCATATGGTCCCCAACAGCACCACTGGCAATCACATCAGCCGCCGCCGGCAGATCATGTCGTGGGGGCAGTTCCGAAACCGACTCCTCCGCCAGCATCACGGCCGCCGCCGTCCCCCCCGATTATAAACAGCAGCGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGTTGGCTCCTGCTCCATCTTCTATTCCCTTGGGCTTTTCACAAAGCAGTTTCAGTTATGAAGAATTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAATCTCCTTGGACAAGGTGGGTTTGGTTATGTGCATAAAGGAGTTCTTCCAAACGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAACGTGAATTTCAAGCAGAAGTAGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTGGTGGGATATTGCATCACTGGCTCGAACAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTTCACTTGCACGGGAAAGGACGACCTACCATGGATTGGCCAACGAGACTGAAAATCGCTCTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCCGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCTGATTTTGGGCTTGCCAAGTTATCTTCTGATCTTAATACCCATGTTTCAACCCGAGTCATGGGAACTTTCGGATATCTTGCTCCTGAATACGCTTCAAGTGGGAAACTCACTGAGAAATCAGACGTCTTCTCCTTCGGAGTGATGCTTTTGGAGTTGATTACTGGACGAAGACCTGTCGATACAACTCAATCCTTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGTGCCACGGAAGATGGAAACTACGACGGTCTAGTAGATCCAGGGCTGCGAGATAACTACGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCCGCCGCCTGCGTACGTCATTCGGCGAGGCGCCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGCGAAGCCTCGCTTTCTGATCTCAACGAAGGAATCAGGCCTGGACATAGCACCGTATACAGTTCTTATGGAAGCTCCGACTACGACACGGCTCAGTACAACGAGGACCTGAAAAAGTTCAGGAAGATGGCGCTGGCGAGCCAGGAGTACGGCAGCGAGTTCAGCGAGCCGACGAGCGAGTATGGTCTGTACCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCGTGA 1896 54.06 MSSPAPTSPPATNTTSPPPPTTDAPPPAPPSLSPPPPDTPSQTPPPSTTPSPPPPNSTTQSPPTSSPSPPTAPSSSPPPPTNSTAPPQLPSPTPPSNSGTPANPGGSQAPPSEATPSPSPSSGVSAGLVAGVAIAGVVVVVVALIVMFLCFRKKRRRDEEAYYRPPPPPPAAFKDGPYGPQQHHWQSHQPPPADHVVGAVPKPTPPPASRPPPSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFSYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSNRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDLNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGNYDGLVDPGLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEFSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7416777 7419881 + Maker00022361 Lcy2g0819 625584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0819 631 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 90 580 IPR047117 -
Lcy2g0819 631 MobiDBLite consensus disorder prediction 590 631 - -
Lcy2g0819 631 FunFam Proline-rich receptor-like protein kinase PERK1 339 547 - -
Lcy2g0819 631 MobiDBLite consensus disorder prediction 158 234 - -
Lcy2g0819 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0819 631 MobiDBLite consensus disorder prediction 1 124 - -
Lcy2g0819 631 Gene3D Phosphorylase Kinase; domain 1 238 338 - -
Lcy2g0819 631 MobiDBLite consensus disorder prediction 1 99 - -
Lcy2g0819 631 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524(InterPro)
Lcy2g0819 631 MobiDBLite consensus disorder prediction 196 218 - -
Lcy2g0819 631 FunFam proline-rich receptor-like protein kinase PERK1 241 338 - -
Lcy2g0819 631 Pfam Protein tyrosine and serine/threonine kinase 267 536 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0819 631 Gene3D Transferase(Phosphotransferase) domain 1 339 548 - -
Lcy2g0819 631 SUPERFAMILY Protein kinase-like (PK-like) 238 536 IPR011009 -
Lcy2g0819 631 SMART serkin_6 263 536 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0819 631 MobiDBLite consensus disorder prediction 219 234 - -
Lcy2g0819 631 MobiDBLite consensus disorder prediction 590 613 - -
Lcy2g0819 631 ProSiteProfiles Protein kinase domain profile. 263 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2106 Lcy-Chr10:45109045 Lcy2g0819 Lcy-Chr2:7416777 1.77E-145 dispersed
Lcy13g0608 Lcy-Chr13:7963263 Lcy2g0819 Lcy-Chr2:7416777 3.30E-38 dispersed
Lcy2g0819 Lcy-Chr2:7416777 Lcy6g0958 Lcy-Chr6:9927952 1.94E-180 dispersed
Lcy8g0109 Lcy-Chr8:2555692 Lcy2g0819 Lcy-Chr2:7416777 9.03E-74 dispersed
Lcy8g1256 Lcy-Chr8:39141190 Lcy2g0819 Lcy-Chr2:7416777 2.40E-68 dispersed
Lcy9g1020 Lcy-Chr9:33629571 Lcy2g0819 Lcy-Chr2:7416777 1.69E-75 dispersed
Lcy9g2164 Lcy-Chr9:46332711 Lcy2g0819 Lcy-Chr2:7416777 6.71E-73 dispersed
Lcy12g0675 Lcy-Chr12:8376272 Lcy2g0819 Lcy-Chr2:7416777 2.61E-61 transposed
Lcy2g0819 Lcy-Chr2:7416777 Lcy4g2167 Lcy-Chr4:48245933 2.18E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65728 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0819 - - - 0.0